 "lfq_settings": {
      "peak_scoring": "Hybrid",
      "integration": "Sum",
      "spectral_angle": 0.7,
      "ppm_tolerance": 5.0,
      "combine_charge_states": true
    }
 "deisotope": true,
  "chimera": true,
  "wide_window": false,
  "min_peaks": 15,
  "max_peaks": 150,
  "max_fragment_charge": 1,
  "min_matched_peaks": 4,
  "report_psms": 1,
  "predict_rt": true,


--- Resubmitted on 2026-03-30 16:41:22 UTC ---
Changes detected:
  Row count: 30678 → 30351
  Added columns: ['epsilon_precision_mean', 'epsilon_precision_median', 'log2_empirical_mean', 'log2_empirical_median']
Parameter corrections applied:
  ident_fdr_psm: 'None' → 'nan'
  ident_fdr_peptide: 'None' → 'nan'
  protein_inference: 'None' → 'nan'
  quantification_method: 'None' → 'Hybrid'
  abundance_normalization_ions: 'None' → 'nan'
  ident_fdr_protein: 'None' → 'nan'
--- PERSISTED_CORRECTIONS ---
CORRECTION:ident_fdr_psm=nan
CORRECTION:ident_fdr_peptide=nan
CORRECTION:protein_inference=nan
CORRECTION:quantification_method=Hybrid
CORRECTION:abundance_normalization_ions=nan
CORRECTION:ident_fdr_protein=nan
--- END_PERSISTED_CORRECTIONS ---