Spectronaut 21.0.260602.94842
Computer Name: HALBARAD
User Domain Name: SPECTROMASSE
User Name: voyager
Analysis Mode: UI
Analysis Type: directDIA
Analysis Date: 01-August-2026 04:01:39 UTC +02:00 


[BEGIN-SETTINGS]
Settings Used: BGS Factory Settings
   ├─ DIA Analysis\Calibration
   │  ├─ MZ Extraction Strategy:	Maximum Intensity
   │  ├─ Allow source specific iRT Calibration:	True
   │  ├─ Precision iRT:	True
   │  │  ├─ Exclude De-amidated Peptides:	True
   │  │  └─ iRT <-> RT Regression Type:	Local (Non-Linear) Regression
   │  └─ Calibration Carry-Over:	False
   ├─ DIA Analysis\Identification
   │  ├─ Precursor Qvalue Cutoff:	0.01
   │  ├─ Precursor Qvalue Cutoff (Experiment):	0.01
   │  ├─ Precursor PEP Cutoff:	0.2
   │  ├─ Protein Qvalue Cutoff (Experiment):	0.01
   │  ├─ Protein Qvalue Cutoff (Run):	0.05
   │  ├─ Protein PEP Cutoff:	0.75
   │  ├─ Single Hit Definition:	By Stripped Sequence
   │  ├─ Single Hit Protein Rule:	Stratified Single Hit Protein FDR
   │  ├─ Run-Level Protein Scoring:	All Observations
   │  ├─ Exclude Duplicate Assays:	True
   │  ├─ Exclude Predicted Fragment Scores:	False
   │  ├─ Generate Decoys:	True
   │  │  ├─ Decoy Generation Method:	Mutated
   │  │  │  └─ Preferred Fragment Source:	NN Predicted Fragments
   │  │  └─ Decoy Limit Strategy:	Dynamic
   │  │     └─ Library Size Fraction:	0.1
   │  ├─ ISF Filter Rule:	Keep "Likely In-Source Fragmented" Peptides
   │  └─ Pvalue Estimator:	Kernel Density Estimator
   ├─ DIA Analysis\Pipeline Mode
   │  ├─ Export All XICs:	False
   │  ├─ Export report in Parquet format:	False
   │  ├─ Generate SNE File:	True
   │  │  └─ Store Ion traces in SNE:	True
   │  ├─ Post Analysis Reports:	
   │  │  ├─ Binned CVs:	False
   │  │  ├─ Binned Identification:	False
   │  │  ├─ CV Density Line Chart:	False
   │  │  ├─ CVs Below X Bar Chart:	False
   │  │  ├─ Data Completeness Bar Chart:	False
   │  │  ├─ Modification Enrichment:	False
   │  │  ├─ Run Identifications Bar Chart:	False
   │  │  ├─ Scoring Histograms:	False
   │  │  └─ TIC Overlay:	False
   │  ├─ PTM Report Schema:	
   │  ├─ Report Schema:	BGS Factory Report (Normal)
   │  └─ Reporting Unit:	Across Experiment
   ├─ DIA Analysis\Post Analysis
   │  ├─ Differential Abundance Testing:	Unpaired t-test
   │  │  ├─ Assume Equal Variance:	False
   │  │  ├─ Group-Wise Testing Correction:	False
   │  │  ├─ Log2 Ratio Candidate Filter:	0.58
   │  │  └─ Confidence Candidate Filter:	Qvalue
   │  │     └─ Confidence:	0.05
   │  ├─ Differential Abundance Grouping:	Major Group (Quantification Settings)
   │  │  └─ Smallest Quantitative Unit:	Major Group (Quantification Settings)
   │  │     └─ Use All MS-Level Quantities:	False
   │  ├─ Calculate Explained TIC:	None
   │  ├─ Calculate Sample Correlation Matrix:	False
   │  ├─ Gene Ontology:	C:\Users\voyager\AppData\Roaming\Spectronaut\geneOntology\Ontologies\bgs_default_go-basic.obo
   │  └─ Hierarchical Clustering:	True
   │     ├─ Distance Metric:	Manhattan Distance
   │     ├─ Linkage Strategy:	Ward's Method
   │     ├─ Order Runs by Clustering:	True
   │     └─ Z-score Transformation:	False
   ├─ DIA Analysis\Protein Inference
   │  └─ Protein Inference Workflow:	Automatic
   │     └─ Inference Algorithm:	IDPicker
   ├─ DIA Analysis\PTM Workflow
   │  ├─ Input Normalization Strategy:	None
   │  └─ PTM Localization:	False
   ├─ DIA Analysis\Quantification
   │  ├─ Precursor Filtering:	Identified (Qvalue)
   │  │  ├─ Imputation Strategy:	None
   │  │  └─ Multi Channel Qvalue Filter:	Group Qvalue
   │  ├─ Proteotypicity Filter:	None
   │  ├─ Protein LFQ Method:	Automatic
   │  ├─ Quantity MS Level:	MS2
   │  ├─ Quantity Type:	Area
   │  ├─ Cross-Run Normalization:	True
   │  │  ├─ Normalization Filter Type:	None
   │  │  ├─ Normalization Strategy:	Automatic
   │  │  └─ Row Selection:	Automatic
   │  ├─ Perform background noise removal:	True
   │  ├─ Quantification window:	Synchronized
   │  ├─ Interference Correction:	True
   │  │  ├─ Only Identified Peptides:	True
   │  │  ├─ Exclude All Multi-Channel Interferences:	True
   │  │  ├─ MS1 Min:	2
   │  │  └─ MS2 Min:	3
   │  ├─ Major Group Quantity:	Mean peptide quantity
   │  ├─ Minor (Peptide) Grouping:	by Stripped Sequence
   │  ├─ Major (Protein) Grouping:	by Protein Group Id
   │  ├─ Major Group Top N:	True
   │  │  ├─ Max:	3
   │  │  └─ Min:	1
   │  ├─ Minor Group Quantity:	Mean precursor quantity
   │  ├─ Minor Group Top N:	True
   │  │  ├─ Max:	3
   │  │  └─ Min:	1
   │  ├─ Use Log2 Quantity Filter:	True
   │  │  └─ Minimum Log2 Precursor Quantity:	0
   │  └─ Perform IM Peak Picking for Quantification:	True
   ├─ DIA Analysis\Tolerances
   │  └─ Tolerances:	
   │     ├─ Calibration Tolerances:	
   │     │  ├─ MS1 Mass Tolerance Strategy:	Dynamic
   │     │  │  └─ Correction Factor:	1
   │     │  └─ MS2 Mass Tolerance Strategy:	Dynamic
   │     │     └─ Correction Factor:	1
   │     └─ Main Search Tolerances:	
   │        ├─ MS1 Mass Tolerance Strategy:	Dynamic
   │        │  └─ Correction Factor:	1
   │        └─ MS2 Mass Tolerance Strategy:	Dynamic
   │           └─ Correction Factor:	1
   ├─ DIA Analysis\Workflow
   │  ├─ Method Evaluation:	False
   │  ├─ MS2 DeMultiplexing:	Automatic
   │  ├─ Multi-Channel Workflow Definition:	From Library Annotation
   │  │  └─ Fallback Option:	Labeled
   │  ├─ Profiling Strategy:	None
   │  ├─ Run Limit for directDIA Library:	None
   │  ├─ Hybrid (DDA + DIA) Library:	False
   │  └─ Unify Peptide Peaks Strategy:	None
   ├─ DIA Analysis\XIC Extraction
   │  ├─ XIC IM Extraction Window:	Dynamic
   │  │  └─ Correction Factor:	1
   │  └─ XIC RT Extraction Window:	Dynamic
   │     └─ Correction Factor:	1
   ├─ Pulsar Search\Identification
   │  ├─ directDIA Workflow:	directDIA+ (Deep)
   │  │  ├─ IM Sampling Reduction:	7
   │  │  └─ RT Sampling Reduction:	1
   │  ├─ PTM Localization Filter:	False
   │  ├─ Grouped Peptide FDR:	None
   │  └─ Semi-Specific Pipeline:	Smart Enumeration (SN20)
   ├─ Pulsar Search\iRT Calibration
   │  ├─ Calibrate from Empirical RT:	False
   │  ├─ Auto-assign iRT source:	True
   │  ├─ iRT Reference Strategy:	Deep Learning Assisted iRT Regression
   │  ├─ Use Source Specific iRT:	Auto
   │  └─ Minimum Rsquare:	0.8
   ├─ Pulsar Search\Labeling
   │  └─ Channels:	
   │     ├─ Channel 1:	False
   │     ├─ Channel 2:	False
   │     ├─ Channel 3:	False
   │     ├─ Channel 4:	False
   │     └─ Channel 5:	False
   ├─ Pulsar Search\Modifications
   │  └─ Search Mode:	Closed Search
   │     ├─ Max Variable Modifications:	5
   │     ├─ Fixed Modifications::	Carbamidomethyl (C)
   │     └─ Variable Modifications::	Acetyl (Protein N-term), Oxidation (M)
   ├─ Pulsar Search\Peptides
   │  ├─ Enzymes / Cleavage Rules:	Trypsin/P
   │  ├─ Digest Type:	Specific
   │  ├─ Decoy Generation Rule:	KR
   │  ├─ Max Peptide Length:	52
   │  ├─ Min Peptide Length:	7
   │  ├─ Missed Cleavages:	2
   │  └─ Toggle N-terminal M:	True
   ├─ Pulsar Search\Result Filters
   │  ├─ Fragment Ions:	
   │  │  ├─ Ion AA Length:	True
   │  │  │  └─ N:	3
   │  │  ├─ Ion Charge:	False
   │  │  ├─ Ion Loss Type:	False
   │  │  ├─ Ion Type:	False
   │  │  ├─ m/z :	True
   │  │  │  ├─ Max:	3000
   │  │  │  └─ Min:	200
   │  │  ├─ Overlapping between Channels:	False
   │  │  └─ Relative Intensity:	True
   │  │     └─ Min:	1
   │  └─ Precursors:	
   │     ├─ Amino Acids:	False
   │     ├─ Best N Fragments per Peptide:	True
   │     │  ├─ Max:	6
   │     │  └─ Min:	3
   │     ├─ Best N Peptides per Protein Group:	False
   │     ├─ Channel Count:	False
   │     ├─ FASTA Matched:	False
   │     ├─ Missed Cleavage:	False
   │     ├─ Modifications:	None
   │     ├─ Peptide Charge:	False
   │     └─ Proteotypicity:	False
   ├─ Pulsar Search\Speed-Up
   │  ├─ MS2 Index:	Automatic
   │  └─ dia-PASEF Pre-Processing:	Automatic
   └─ Pulsar Search\Workflow
      ├─ Fragment Ion Selection Strategy:	Intensity Based
      ├─ In-Silico Generate Missing Channels:	False
      └─ Use DNN Predicted Ion Mobility:	Auto
[END-SETTINGS]

[BEGIN-SETUP]
Run: LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw
   ├─ Vendor: Thermo
   ├─ File: LFQ_Astral_DIA_15min_50ng_Condition_A_REP1
   ├─ Path: "\\tol-brandir\Masse\Public datasets\ProteoBench\Module_quant_DIA_Astral\LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw"
   ├─ Condition: Not Defined
   ├─ Replicate: 1
   ├─ HTRMS Version: 21.0.260602.94842
   ├─ Protein Databases Used
   │  └─ ProteoBenchFASTA_MixedSpecies_HYE
   │     ├─ Protein Entries: 31 889
   │     ├─ Original File: ProteoBenchFASTA_MixedSpecies_HYE.fasta
   │     ├─ Date Created: 24-February-2026 09:47:25 UTC +01:00 
   │     ├─ Date Modified: 01-August-2026 02:22:17 UTC +02:00 
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [380.4 - 382.4]
      ├─ [382.4 - 384.4]
      ├─ [384.4 - 386.4]
      ├─ [386.4 - 388.4]
      ├─ [388.4 - 390.4]
      ├─ [390.4 - 392.4]
      ├─ [392.4 - 394.4]
      ├─ [394.4 - 396.4]
      ├─ [396.4 - 398.4]
      ├─ [398.4 - 400.4]
      ├─ [400.4 - 402.4]
      ├─ [402.4 - 404.4]
      ├─ [404.4 - 406.4]
      ├─ [406.4 - 408.4]
      ├─ [408.4 - 410.4]
      ├─ [410.4 - 412.4]
      ├─ [412.4 - 414.4]
      ├─ [414.4 - 416.4]
      ├─ [416.4 - 418.4]
      ├─ [418.4 - 420.4]
      ├─ [420.4 - 422.4]
      ├─ [422.4 - 424.4]
      ├─ [424.4 - 426.4]
      ├─ [426.4 - 428.4]
      ├─ [428.4 - 430.4]
      ├─ [430.4 - 432.4]
      ├─ [432.4 - 434.4]
      ├─ [434.4 - 436.4]
      ├─ [436.4 - 438.4]
      ├─ [438.4 - 440.5]
      ├─ [440.5 - 442.5]
      ├─ [442.5 - 444.5]
      ├─ [444.5 - 446.5]
      ├─ [446.5 - 448.5]
      ├─ [448.5 - 450.5]
      ├─ [450.5 - 452.5]
      ├─ [452.5 - 454.5]
      ├─ [454.5 - 456.5]
      ├─ [456.5 - 458.5]
      ├─ [458.5 - 460.5]
      ├─ [460.5 - 462.5]
      ├─ [462.5 - 464.5]
      ├─ [464.5 - 466.5]
      ├─ [466.5 - 468.5]
      ├─ [468.5 - 470.5]
      ├─ [470.5 - 472.5]
      ├─ [472.5 - 474.5]
      ├─ [474.5 - 476.5]
      ├─ [476.5 - 478.5]
      ├─ [478.5 - 480.5]
      ├─ [480.5 - 482.5]
      ├─ [482.5 - 484.5]
      ├─ [484.5 - 486.5]
      ├─ [486.5 - 488.5]
      ├─ [488.5 - 490.5]
      ├─ [490.5 - 492.5]
      ├─ [492.5 - 494.5]
      ├─ [494.5 - 496.5]
      ├─ [496.5 - 498.5]
      ├─ [498.5 - 500.5]
      ├─ [500.5 - 502.5]
      ├─ [502.5 - 504.5]
      ├─ [504.5 - 506.5]
      ├─ [506.5 - 508.5]
      ├─ [508.5 - 510.5]
      ├─ [510.5 - 512.5]
      ├─ [512.5 - 514.5]
      ├─ [514.5 - 516.5]
      ├─ [516.5 - 518.5]
      ├─ [518.5 - 520.5]
      ├─ [520.5 - 522.5]
      ├─ [522.5 - 524.5]
      ├─ [524.5 - 526.5]
      ├─ [526.5 - 528.5]
      ├─ [528.5 - 530.5]
      ├─ [530.5 - 532.5]
      ├─ [532.5 - 534.5]
      ├─ [534.5 - 536.5]
      ├─ [536.5 - 538.5]
      ├─ [538.5 - 540.5]
      ├─ [540.5 - 542.5]
      ├─ [542.5 - 544.5]
      ├─ [544.5 - 546.5]
      ├─ [546.5 - 548.5]
      ├─ [548.5 - 550.5]
      ├─ [550.5 - 552.5]
      ├─ [552.5 - 554.5]
      ├─ [554.5 - 556.5]
      ├─ [556.5 - 558.5]
      ├─ [558.5 - 560.5]
      ├─ [560.5 - 562.5]
      ├─ [562.5 - 564.5]
      ├─ [564.5 - 566.5]
      ├─ [566.5 - 568.5]
      ├─ [568.5 - 570.5]
      ├─ [570.5 - 572.5]
      ├─ [572.5 - 574.5]
      ├─ [574.5 - 576.5]
      ├─ [576.5 - 578.5]
      ├─ [578.5 - 580.5]
      ├─ [580.5 - 582.5]
      ├─ [582.5 - 584.5]
      ├─ [584.5 - 586.5]
      ├─ [586.5 - 588.5]
      ├─ [588.5 - 590.5]
      ├─ [590.5 - 592.5]
      ├─ [592.5 - 594.5]
      ├─ [594.5 - 596.5]
      ├─ [596.5 - 598.5]
      ├─ [598.5 - 600.5]
      ├─ [600.5 - 602.5]
      ├─ [602.5 - 604.5]
      ├─ [604.5 - 606.5]
      ├─ [606.5 - 608.5]
      ├─ [608.5 - 610.5]
      ├─ [610.5 - 612.5]
      ├─ [612.5 - 614.5]
      ├─ [614.5 - 616.5]
      ├─ [616.5 - 618.5]
      ├─ [618.5 - 620.5]
      ├─ [620.5 - 622.5]
      ├─ [622.5 - 624.5]
      ├─ [624.5 - 626.5]
      ├─ [626.5 - 628.5]
      ├─ [628.5 - 630.5]
      ├─ [630.5 - 632.5]
      ├─ [632.5 - 634.5]
      ├─ [634.5 - 636.5]
      ├─ [636.5 - 638.5]
      ├─ [638.5 - 640.5]
      ├─ [640.5 - 642.5]
      ├─ [642.5 - 644.5]
      ├─ [644.5 - 646.5]
      ├─ [646.5 - 648.5]
      ├─ [648.5 - 650.5]
      ├─ [650.5 - 652.5]
      ├─ [652.5 - 654.5]
      ├─ [654.5 - 656.5]
      ├─ [656.5 - 658.5]
      ├─ [658.5 - 660.6]
      ├─ [660.6 - 662.6]
      ├─ [662.6 - 664.6]
      ├─ [664.6 - 666.6]
      ├─ [666.6 - 668.6]
      ├─ [668.6 - 670.6]
      ├─ [670.6 - 672.6]
      ├─ [672.6 - 674.6]
      ├─ [674.6 - 676.6]
      ├─ [676.6 - 678.6]
      ├─ [678.6 - 680.6]
      ├─ [680.6 - 682.6]
      ├─ [682.6 - 684.6]
      ├─ [684.6 - 686.6]
      ├─ [686.6 - 688.6]
      ├─ [688.6 - 690.6]
      ├─ [690.6 - 692.6]
      ├─ [692.6 - 694.6]
      ├─ [694.6 - 696.6]
      ├─ [696.6 - 698.6]
      ├─ [698.6 - 700.6]
      ├─ [700.6 - 702.6]
      ├─ [702.6 - 704.6]
      ├─ [704.6 - 706.6]
      ├─ [706.6 - 708.6]
      ├─ [708.6 - 710.6]
      ├─ [710.6 - 712.6]
      ├─ [712.6 - 714.6]
      ├─ [714.6 - 716.6]
      ├─ [716.6 - 718.6]
      ├─ [718.6 - 720.6]
      ├─ [720.6 - 722.6]
      ├─ [722.6 - 724.6]
      ├─ [724.6 - 726.6]
      ├─ [726.6 - 728.6]
      ├─ [728.6 - 730.6]
      ├─ [730.6 - 732.6]
      ├─ [732.6 - 734.6]
      ├─ [734.6 - 736.6]
      ├─ [736.6 - 738.6]
      ├─ [738.6 - 740.6]
      ├─ [740.6 - 742.6]
      ├─ [742.6 - 744.6]
      ├─ [744.6 - 746.6]
      ├─ [746.6 - 748.6]
      ├─ [748.6 - 750.6]
      ├─ [750.6 - 752.6]
      ├─ [752.6 - 754.6]
      ├─ [754.6 - 756.6]
      ├─ [756.6 - 758.6]
      ├─ [758.6 - 760.6]
      ├─ [760.6 - 762.6]
      ├─ [762.6 - 764.6]
      ├─ [764.6 - 766.6]
      ├─ [766.6 - 768.6]
      ├─ [768.6 - 770.6]
      ├─ [770.6 - 772.6]
      ├─ [772.6 - 774.6]
      ├─ [774.6 - 776.6]
      ├─ [776.6 - 778.6]
      ├─ [778.6 - 780.6]
      ├─ [780.6 - 782.6]
      ├─ [782.6 - 784.6]
      ├─ [784.6 - 786.6]
      ├─ [786.6 - 788.6]
      ├─ [788.6 - 790.6]
      ├─ [790.6 - 792.6]
      ├─ [792.6 - 794.6]
      ├─ [794.6 - 796.6]
      ├─ [796.6 - 798.6]
      ├─ [798.6 - 800.6]
      ├─ [800.6 - 802.6]
      ├─ [802.6 - 804.6]
      ├─ [804.6 - 806.6]
      ├─ [806.6 - 808.6]
      ├─ [808.6 - 810.6]
      ├─ [810.6 - 812.6]
      ├─ [812.6 - 814.6]
      ├─ [814.6 - 816.6]
      ├─ [816.6 - 818.6]
      ├─ [818.6 - 820.6]
      ├─ [820.6 - 822.6]
      ├─ [822.6 - 824.6]
      ├─ [824.6 - 826.6]
      ├─ [826.6 - 828.6]
      ├─ [828.6 - 830.6]
      ├─ [830.6 - 832.6]
      ├─ [832.6 - 834.6]
      ├─ [834.6 - 836.6]
      ├─ [836.6 - 838.6]
      ├─ [838.6 - 840.6]
      ├─ [840.6 - 842.6]
      ├─ [842.6 - 844.6]
      ├─ [844.6 - 846.6]
      ├─ [846.6 - 848.6]
      ├─ [848.6 - 850.6]
      ├─ [850.6 - 852.6]
      ├─ [852.6 - 854.6]
      ├─ [854.6 - 856.6]
      ├─ [856.6 - 858.6]
      ├─ [858.6 - 860.6]
      ├─ [860.6 - 862.6]
      ├─ [862.6 - 864.6]
      ├─ [864.6 - 866.6]
      ├─ [866.6 - 868.6]
      ├─ [868.6 - 870.6]
      ├─ [870.6 - 872.6]
      ├─ [872.6 - 874.6]
      ├─ [874.6 - 876.6]
      ├─ [876.6 - 878.6]
      ├─ [878.6 - 880.7]
      ├─ [880.7 - 882.7]
      ├─ [882.7 - 884.7]
      ├─ [884.7 - 886.7]
      ├─ [886.7 - 888.7]
      ├─ [888.7 - 890.7]
      ├─ [890.7 - 892.7]
      ├─ [892.7 - 894.7]
      ├─ [894.7 - 896.7]
      ├─ [896.7 - 898.7]
      ├─ [898.7 - 900.7]
      ├─ [900.7 - 902.7]
      ├─ [902.7 - 904.7]
      ├─ [904.7 - 906.7]
      ├─ [906.7 - 908.7]
      ├─ [908.7 - 910.7]
      ├─ [910.7 - 912.7]
      ├─ [912.7 - 914.7]
      ├─ [914.7 - 916.7]
      ├─ [916.7 - 918.7]
      ├─ [918.7 - 920.7]
      ├─ [920.7 - 922.7]
      ├─ [922.7 - 924.7]
      ├─ [924.7 - 926.7]
      ├─ [926.7 - 928.7]
      ├─ [928.7 - 930.7]
      ├─ [930.7 - 932.7]
      ├─ [932.7 - 934.7]
      ├─ [934.7 - 936.7]
      ├─ [936.7 - 938.7]
      ├─ [938.7 - 940.7]
      ├─ [940.7 - 942.7]
      ├─ [942.7 - 944.7]
      ├─ [944.7 - 946.7]
      ├─ [946.7 - 948.7]
      ├─ [948.7 - 950.7]
      ├─ [950.7 - 952.7]
      ├─ [952.7 - 954.7]
      ├─ [954.7 - 956.7]
      ├─ [956.7 - 958.7]
      ├─ [958.7 - 960.7]
      ├─ [960.7 - 962.7]
      ├─ [962.7 - 964.7]
      ├─ [964.7 - 966.7]
      ├─ [966.7 - 968.7]
      ├─ [968.7 - 970.7]
      ├─ [970.7 - 972.7]
      ├─ [972.7 - 974.7]
      ├─ [974.7 - 976.7]
      ├─ [976.7 - 978.7]
      └─ [978.7 - 980.7]

Run: LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw
   ├─ Vendor: Thermo
   ├─ File: LFQ_Astral_DIA_15min_50ng_Condition_A_REP2
   ├─ Path: "\\tol-brandir\Masse\Public datasets\ProteoBench\Module_quant_DIA_Astral\LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw"
   ├─ Condition: Not Defined
   ├─ Replicate: 2
   ├─ HTRMS Version: 21.0.260602.94842
   ├─ Protein Databases Used
   │  └─ ProteoBenchFASTA_MixedSpecies_HYE
   │     ├─ Protein Entries: 31 889
   │     ├─ Original File: ProteoBenchFASTA_MixedSpecies_HYE.fasta
   │     ├─ Date Created: 24-February-2026 09:47:25 UTC +01:00 
   │     ├─ Date Modified: 01-August-2026 02:22:17 UTC +02:00 
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [380.4 - 382.4]
      ├─ [382.4 - 384.4]
      ├─ [384.4 - 386.4]
      ├─ [386.4 - 388.4]
      ├─ [388.4 - 390.4]
      ├─ [390.4 - 392.4]
      ├─ [392.4 - 394.4]
      ├─ [394.4 - 396.4]
      ├─ [396.4 - 398.4]
      ├─ [398.4 - 400.4]
      ├─ [400.4 - 402.4]
      ├─ [402.4 - 404.4]
      ├─ [404.4 - 406.4]
      ├─ [406.4 - 408.4]
      ├─ [408.4 - 410.4]
      ├─ [410.4 - 412.4]
      ├─ [412.4 - 414.4]
      ├─ [414.4 - 416.4]
      ├─ [416.4 - 418.4]
      ├─ [418.4 - 420.4]
      ├─ [420.4 - 422.4]
      ├─ [422.4 - 424.4]
      ├─ [424.4 - 426.4]
      ├─ [426.4 - 428.4]
      ├─ [428.4 - 430.4]
      ├─ [430.4 - 432.4]
      ├─ [432.4 - 434.4]
      ├─ [434.4 - 436.4]
      ├─ [436.4 - 438.4]
      ├─ [438.4 - 440.5]
      ├─ [440.5 - 442.5]
      ├─ [442.5 - 444.5]
      ├─ [444.5 - 446.5]
      ├─ [446.5 - 448.5]
      ├─ [448.5 - 450.5]
      ├─ [450.5 - 452.5]
      ├─ [452.5 - 454.5]
      ├─ [454.5 - 456.5]
      ├─ [456.5 - 458.5]
      ├─ [458.5 - 460.5]
      ├─ [460.5 - 462.5]
      ├─ [462.5 - 464.5]
      ├─ [464.5 - 466.5]
      ├─ [466.5 - 468.5]
      ├─ [468.5 - 470.5]
      ├─ [470.5 - 472.5]
      ├─ [472.5 - 474.5]
      ├─ [474.5 - 476.5]
      ├─ [476.5 - 478.5]
      ├─ [478.5 - 480.5]
      ├─ [480.5 - 482.5]
      ├─ [482.5 - 484.5]
      ├─ [484.5 - 486.5]
      ├─ [486.5 - 488.5]
      ├─ [488.5 - 490.5]
      ├─ [490.5 - 492.5]
      ├─ [492.5 - 494.5]
      ├─ [494.5 - 496.5]
      ├─ [496.5 - 498.5]
      ├─ [498.5 - 500.5]
      ├─ [500.5 - 502.5]
      ├─ [502.5 - 504.5]
      ├─ [504.5 - 506.5]
      ├─ [506.5 - 508.5]
      ├─ [508.5 - 510.5]
      ├─ [510.5 - 512.5]
      ├─ [512.5 - 514.5]
      ├─ [514.5 - 516.5]
      ├─ [516.5 - 518.5]
      ├─ [518.5 - 520.5]
      ├─ [520.5 - 522.5]
      ├─ [522.5 - 524.5]
      ├─ [524.5 - 526.5]
      ├─ [526.5 - 528.5]
      ├─ [528.5 - 530.5]
      ├─ [530.5 - 532.5]
      ├─ [532.5 - 534.5]
      ├─ [534.5 - 536.5]
      ├─ [536.5 - 538.5]
      ├─ [538.5 - 540.5]
      ├─ [540.5 - 542.5]
      ├─ [542.5 - 544.5]
      ├─ [544.5 - 546.5]
      ├─ [546.5 - 548.5]
      ├─ [548.5 - 550.5]
      ├─ [550.5 - 552.5]
      ├─ [552.5 - 554.5]
      ├─ [554.5 - 556.5]
      ├─ [556.5 - 558.5]
      ├─ [558.5 - 560.5]
      ├─ [560.5 - 562.5]
      ├─ [562.5 - 564.5]
      ├─ [564.5 - 566.5]
      ├─ [566.5 - 568.5]
      ├─ [568.5 - 570.5]
      ├─ [570.5 - 572.5]
      ├─ [572.5 - 574.5]
      ├─ [574.5 - 576.5]
      ├─ [576.5 - 578.5]
      ├─ [578.5 - 580.5]
      ├─ [580.5 - 582.5]
      ├─ [582.5 - 584.5]
      ├─ [584.5 - 586.5]
      ├─ [586.5 - 588.5]
      ├─ [588.5 - 590.5]
      ├─ [590.5 - 592.5]
      ├─ [592.5 - 594.5]
      ├─ [594.5 - 596.5]
      ├─ [596.5 - 598.5]
      ├─ [598.5 - 600.5]
      ├─ [600.5 - 602.5]
      ├─ [602.5 - 604.5]
      ├─ [604.5 - 606.5]
      ├─ [606.5 - 608.5]
      ├─ [608.5 - 610.5]
      ├─ [610.5 - 612.5]
      ├─ [612.5 - 614.5]
      ├─ [614.5 - 616.5]
      ├─ [616.5 - 618.5]
      ├─ [618.5 - 620.5]
      ├─ [620.5 - 622.5]
      ├─ [622.5 - 624.5]
      ├─ [624.5 - 626.5]
      ├─ [626.5 - 628.5]
      ├─ [628.5 - 630.5]
      ├─ [630.5 - 632.5]
      ├─ [632.5 - 634.5]
      ├─ [634.5 - 636.5]
      ├─ [636.5 - 638.5]
      ├─ [638.5 - 640.5]
      ├─ [640.5 - 642.5]
      ├─ [642.5 - 644.5]
      ├─ [644.5 - 646.5]
      ├─ [646.5 - 648.5]
      ├─ [648.5 - 650.5]
      ├─ [650.5 - 652.5]
      ├─ [652.5 - 654.5]
      ├─ [654.5 - 656.5]
      ├─ [656.5 - 658.5]
      ├─ [658.5 - 660.6]
      ├─ [660.6 - 662.6]
      ├─ [662.6 - 664.6]
      ├─ [664.6 - 666.6]
      ├─ [666.6 - 668.6]
      ├─ [668.6 - 670.6]
      ├─ [670.6 - 672.6]
      ├─ [672.6 - 674.6]
      ├─ [674.6 - 676.6]
      ├─ [676.6 - 678.6]
      ├─ [678.6 - 680.6]
      ├─ [680.6 - 682.6]
      ├─ [682.6 - 684.6]
      ├─ [684.6 - 686.6]
      ├─ [686.6 - 688.6]
      ├─ [688.6 - 690.6]
      ├─ [690.6 - 692.6]
      ├─ [692.6 - 694.6]
      ├─ [694.6 - 696.6]
      ├─ [696.6 - 698.6]
      ├─ [698.6 - 700.6]
      ├─ [700.6 - 702.6]
      ├─ [702.6 - 704.6]
      ├─ [704.6 - 706.6]
      ├─ [706.6 - 708.6]
      ├─ [708.6 - 710.6]
      ├─ [710.6 - 712.6]
      ├─ [712.6 - 714.6]
      ├─ [714.6 - 716.6]
      ├─ [716.6 - 718.6]
      ├─ [718.6 - 720.6]
      ├─ [720.6 - 722.6]
      ├─ [722.6 - 724.6]
      ├─ [724.6 - 726.6]
      ├─ [726.6 - 728.6]
      ├─ [728.6 - 730.6]
      ├─ [730.6 - 732.6]
      ├─ [732.6 - 734.6]
      ├─ [734.6 - 736.6]
      ├─ [736.6 - 738.6]
      ├─ [738.6 - 740.6]
      ├─ [740.6 - 742.6]
      ├─ [742.6 - 744.6]
      ├─ [744.6 - 746.6]
      ├─ [746.6 - 748.6]
      ├─ [748.6 - 750.6]
      ├─ [750.6 - 752.6]
      ├─ [752.6 - 754.6]
      ├─ [754.6 - 756.6]
      ├─ [756.6 - 758.6]
      ├─ [758.6 - 760.6]
      ├─ [760.6 - 762.6]
      ├─ [762.6 - 764.6]
      ├─ [764.6 - 766.6]
      ├─ [766.6 - 768.6]
      ├─ [768.6 - 770.6]
      ├─ [770.6 - 772.6]
      ├─ [772.6 - 774.6]
      ├─ [774.6 - 776.6]
      ├─ [776.6 - 778.6]
      ├─ [778.6 - 780.6]
      ├─ [780.6 - 782.6]
      ├─ [782.6 - 784.6]
      ├─ [784.6 - 786.6]
      ├─ [786.6 - 788.6]
      ├─ [788.6 - 790.6]
      ├─ [790.6 - 792.6]
      ├─ [792.6 - 794.6]
      ├─ [794.6 - 796.6]
      ├─ [796.6 - 798.6]
      ├─ [798.6 - 800.6]
      ├─ [800.6 - 802.6]
      ├─ [802.6 - 804.6]
      ├─ [804.6 - 806.6]
      ├─ [806.6 - 808.6]
      ├─ [808.6 - 810.6]
      ├─ [810.6 - 812.6]
      ├─ [812.6 - 814.6]
      ├─ [814.6 - 816.6]
      ├─ [816.6 - 818.6]
      ├─ [818.6 - 820.6]
      ├─ [820.6 - 822.6]
      ├─ [822.6 - 824.6]
      ├─ [824.6 - 826.6]
      ├─ [826.6 - 828.6]
      ├─ [828.6 - 830.6]
      ├─ [830.6 - 832.6]
      ├─ [832.6 - 834.6]
      ├─ [834.6 - 836.6]
      ├─ [836.6 - 838.6]
      ├─ [838.6 - 840.6]
      ├─ [840.6 - 842.6]
      ├─ [842.6 - 844.6]
      ├─ [844.6 - 846.6]
      ├─ [846.6 - 848.6]
      ├─ [848.6 - 850.6]
      ├─ [850.6 - 852.6]
      ├─ [852.6 - 854.6]
      ├─ [854.6 - 856.6]
      ├─ [856.6 - 858.6]
      ├─ [858.6 - 860.6]
      ├─ [860.6 - 862.6]
      ├─ [862.6 - 864.6]
      ├─ [864.6 - 866.6]
      ├─ [866.6 - 868.6]
      ├─ [868.6 - 870.6]
      ├─ [870.6 - 872.6]
      ├─ [872.6 - 874.6]
      ├─ [874.6 - 876.6]
      ├─ [876.6 - 878.6]
      ├─ [878.6 - 880.7]
      ├─ [880.7 - 882.7]
      ├─ [882.7 - 884.7]
      ├─ [884.7 - 886.7]
      ├─ [886.7 - 888.7]
      ├─ [888.7 - 890.7]
      ├─ [890.7 - 892.7]
      ├─ [892.7 - 894.7]
      ├─ [894.7 - 896.7]
      ├─ [896.7 - 898.7]
      ├─ [898.7 - 900.7]
      ├─ [900.7 - 902.7]
      ├─ [902.7 - 904.7]
      ├─ [904.7 - 906.7]
      ├─ [906.7 - 908.7]
      ├─ [908.7 - 910.7]
      ├─ [910.7 - 912.7]
      ├─ [912.7 - 914.7]
      ├─ [914.7 - 916.7]
      ├─ [916.7 - 918.7]
      ├─ [918.7 - 920.7]
      ├─ [920.7 - 922.7]
      ├─ [922.7 - 924.7]
      ├─ [924.7 - 926.7]
      ├─ [926.7 - 928.7]
      ├─ [928.7 - 930.7]
      ├─ [930.7 - 932.7]
      ├─ [932.7 - 934.7]
      ├─ [934.7 - 936.7]
      ├─ [936.7 - 938.7]
      ├─ [938.7 - 940.7]
      ├─ [940.7 - 942.7]
      ├─ [942.7 - 944.7]
      ├─ [944.7 - 946.7]
      ├─ [946.7 - 948.7]
      ├─ [948.7 - 950.7]
      ├─ [950.7 - 952.7]
      ├─ [952.7 - 954.7]
      ├─ [954.7 - 956.7]
      ├─ [956.7 - 958.7]
      ├─ [958.7 - 960.7]
      ├─ [960.7 - 962.7]
      ├─ [962.7 - 964.7]
      ├─ [964.7 - 966.7]
      ├─ [966.7 - 968.7]
      ├─ [968.7 - 970.7]
      ├─ [970.7 - 972.7]
      ├─ [972.7 - 974.7]
      ├─ [974.7 - 976.7]
      ├─ [976.7 - 978.7]
      └─ [978.7 - 980.7]

Run: LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw
   ├─ Vendor: Thermo
   ├─ File: LFQ_Astral_DIA_15min_50ng_Condition_A_REP3
   ├─ Path: "\\tol-brandir\Masse\Public datasets\ProteoBench\Module_quant_DIA_Astral\LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw"
   ├─ Condition: Not Defined
   ├─ Replicate: 3
   ├─ HTRMS Version: 21.0.260602.94842
   ├─ Protein Databases Used
   │  └─ ProteoBenchFASTA_MixedSpecies_HYE
   │     ├─ Protein Entries: 31 889
   │     ├─ Original File: ProteoBenchFASTA_MixedSpecies_HYE.fasta
   │     ├─ Date Created: 24-February-2026 09:47:25 UTC +01:00 
   │     ├─ Date Modified: 01-August-2026 02:22:17 UTC +02:00 
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [380.4 - 382.4]
      ├─ [382.4 - 384.4]
      ├─ [384.4 - 386.4]
      ├─ [386.4 - 388.4]
      ├─ [388.4 - 390.4]
      ├─ [390.4 - 392.4]
      ├─ [392.4 - 394.4]
      ├─ [394.4 - 396.4]
      ├─ [396.4 - 398.4]
      ├─ [398.4 - 400.4]
      ├─ [400.4 - 402.4]
      ├─ [402.4 - 404.4]
      ├─ [404.4 - 406.4]
      ├─ [406.4 - 408.4]
      ├─ [408.4 - 410.4]
      ├─ [410.4 - 412.4]
      ├─ [412.4 - 414.4]
      ├─ [414.4 - 416.4]
      ├─ [416.4 - 418.4]
      ├─ [418.4 - 420.4]
      ├─ [420.4 - 422.4]
      ├─ [422.4 - 424.4]
      ├─ [424.4 - 426.4]
      ├─ [426.4 - 428.4]
      ├─ [428.4 - 430.4]
      ├─ [430.4 - 432.4]
      ├─ [432.4 - 434.4]
      ├─ [434.4 - 436.4]
      ├─ [436.4 - 438.4]
      ├─ [438.4 - 440.5]
      ├─ [440.5 - 442.5]
      ├─ [442.5 - 444.5]
      ├─ [444.5 - 446.5]
      ├─ [446.5 - 448.5]
      ├─ [448.5 - 450.5]
      ├─ [450.5 - 452.5]
      ├─ [452.5 - 454.5]
      ├─ [454.5 - 456.5]
      ├─ [456.5 - 458.5]
      ├─ [458.5 - 460.5]
      ├─ [460.5 - 462.5]
      ├─ [462.5 - 464.5]
      ├─ [464.5 - 466.5]
      ├─ [466.5 - 468.5]
      ├─ [468.5 - 470.5]
      ├─ [470.5 - 472.5]
      ├─ [472.5 - 474.5]
      ├─ [474.5 - 476.5]
      ├─ [476.5 - 478.5]
      ├─ [478.5 - 480.5]
      ├─ [480.5 - 482.5]
      ├─ [482.5 - 484.5]
      ├─ [484.5 - 486.5]
      ├─ [486.5 - 488.5]
      ├─ [488.5 - 490.5]
      ├─ [490.5 - 492.5]
      ├─ [492.5 - 494.5]
      ├─ [494.5 - 496.5]
      ├─ [496.5 - 498.5]
      ├─ [498.5 - 500.5]
      ├─ [500.5 - 502.5]
      ├─ [502.5 - 504.5]
      ├─ [504.5 - 506.5]
      ├─ [506.5 - 508.5]
      ├─ [508.5 - 510.5]
      ├─ [510.5 - 512.5]
      ├─ [512.5 - 514.5]
      ├─ [514.5 - 516.5]
      ├─ [516.5 - 518.5]
      ├─ [518.5 - 520.5]
      ├─ [520.5 - 522.5]
      ├─ [522.5 - 524.5]
      ├─ [524.5 - 526.5]
      ├─ [526.5 - 528.5]
      ├─ [528.5 - 530.5]
      ├─ [530.5 - 532.5]
      ├─ [532.5 - 534.5]
      ├─ [534.5 - 536.5]
      ├─ [536.5 - 538.5]
      ├─ [538.5 - 540.5]
      ├─ [540.5 - 542.5]
      ├─ [542.5 - 544.5]
      ├─ [544.5 - 546.5]
      ├─ [546.5 - 548.5]
      ├─ [548.5 - 550.5]
      ├─ [550.5 - 552.5]
      ├─ [552.5 - 554.5]
      ├─ [554.5 - 556.5]
      ├─ [556.5 - 558.5]
      ├─ [558.5 - 560.5]
      ├─ [560.5 - 562.5]
      ├─ [562.5 - 564.5]
      ├─ [564.5 - 566.5]
      ├─ [566.5 - 568.5]
      ├─ [568.5 - 570.5]
      ├─ [570.5 - 572.5]
      ├─ [572.5 - 574.5]
      ├─ [574.5 - 576.5]
      ├─ [576.5 - 578.5]
      ├─ [578.5 - 580.5]
      ├─ [580.5 - 582.5]
      ├─ [582.5 - 584.5]
      ├─ [584.5 - 586.5]
      ├─ [586.5 - 588.5]
      ├─ [588.5 - 590.5]
      ├─ [590.5 - 592.5]
      ├─ [592.5 - 594.5]
      ├─ [594.5 - 596.5]
      ├─ [596.5 - 598.5]
      ├─ [598.5 - 600.5]
      ├─ [600.5 - 602.5]
      ├─ [602.5 - 604.5]
      ├─ [604.5 - 606.5]
      ├─ [606.5 - 608.5]
      ├─ [608.5 - 610.5]
      ├─ [610.5 - 612.5]
      ├─ [612.5 - 614.5]
      ├─ [614.5 - 616.5]
      ├─ [616.5 - 618.5]
      ├─ [618.5 - 620.5]
      ├─ [620.5 - 622.5]
      ├─ [622.5 - 624.5]
      ├─ [624.5 - 626.5]
      ├─ [626.5 - 628.5]
      ├─ [628.5 - 630.5]
      ├─ [630.5 - 632.5]
      ├─ [632.5 - 634.5]
      ├─ [634.5 - 636.5]
      ├─ [636.5 - 638.5]
      ├─ [638.5 - 640.5]
      ├─ [640.5 - 642.5]
      ├─ [642.5 - 644.5]
      ├─ [644.5 - 646.5]
      ├─ [646.5 - 648.5]
      ├─ [648.5 - 650.5]
      ├─ [650.5 - 652.5]
      ├─ [652.5 - 654.5]
      ├─ [654.5 - 656.5]
      ├─ [656.5 - 658.5]
      ├─ [658.5 - 660.6]
      ├─ [660.6 - 662.6]
      ├─ [662.6 - 664.6]
      ├─ [664.6 - 666.6]
      ├─ [666.6 - 668.6]
      ├─ [668.6 - 670.6]
      ├─ [670.6 - 672.6]
      ├─ [672.6 - 674.6]
      ├─ [674.6 - 676.6]
      ├─ [676.6 - 678.6]
      ├─ [678.6 - 680.6]
      ├─ [680.6 - 682.6]
      ├─ [682.6 - 684.6]
      ├─ [684.6 - 686.6]
      ├─ [686.6 - 688.6]
      ├─ [688.6 - 690.6]
      ├─ [690.6 - 692.6]
      ├─ [692.6 - 694.6]
      ├─ [694.6 - 696.6]
      ├─ [696.6 - 698.6]
      ├─ [698.6 - 700.6]
      ├─ [700.6 - 702.6]
      ├─ [702.6 - 704.6]
      ├─ [704.6 - 706.6]
      ├─ [706.6 - 708.6]
      ├─ [708.6 - 710.6]
      ├─ [710.6 - 712.6]
      ├─ [712.6 - 714.6]
      ├─ [714.6 - 716.6]
      ├─ [716.6 - 718.6]
      ├─ [718.6 - 720.6]
      ├─ [720.6 - 722.6]
      ├─ [722.6 - 724.6]
      ├─ [724.6 - 726.6]
      ├─ [726.6 - 728.6]
      ├─ [728.6 - 730.6]
      ├─ [730.6 - 732.6]
      ├─ [732.6 - 734.6]
      ├─ [734.6 - 736.6]
      ├─ [736.6 - 738.6]
      ├─ [738.6 - 740.6]
      ├─ [740.6 - 742.6]
      ├─ [742.6 - 744.6]
      ├─ [744.6 - 746.6]
      ├─ [746.6 - 748.6]
      ├─ [748.6 - 750.6]
      ├─ [750.6 - 752.6]
      ├─ [752.6 - 754.6]
      ├─ [754.6 - 756.6]
      ├─ [756.6 - 758.6]
      ├─ [758.6 - 760.6]
      ├─ [760.6 - 762.6]
      ├─ [762.6 - 764.6]
      ├─ [764.6 - 766.6]
      ├─ [766.6 - 768.6]
      ├─ [768.6 - 770.6]
      ├─ [770.6 - 772.6]
      ├─ [772.6 - 774.6]
      ├─ [774.6 - 776.6]
      ├─ [776.6 - 778.6]
      ├─ [778.6 - 780.6]
      ├─ [780.6 - 782.6]
      ├─ [782.6 - 784.6]
      ├─ [784.6 - 786.6]
      ├─ [786.6 - 788.6]
      ├─ [788.6 - 790.6]
      ├─ [790.6 - 792.6]
      ├─ [792.6 - 794.6]
      ├─ [794.6 - 796.6]
      ├─ [796.6 - 798.6]
      ├─ [798.6 - 800.6]
      ├─ [800.6 - 802.6]
      ├─ [802.6 - 804.6]
      ├─ [804.6 - 806.6]
      ├─ [806.6 - 808.6]
      ├─ [808.6 - 810.6]
      ├─ [810.6 - 812.6]
      ├─ [812.6 - 814.6]
      ├─ [814.6 - 816.6]
      ├─ [816.6 - 818.6]
      ├─ [818.6 - 820.6]
      ├─ [820.6 - 822.6]
      ├─ [822.6 - 824.6]
      ├─ [824.6 - 826.6]
      ├─ [826.6 - 828.6]
      ├─ [828.6 - 830.6]
      ├─ [830.6 - 832.6]
      ├─ [832.6 - 834.6]
      ├─ [834.6 - 836.6]
      ├─ [836.6 - 838.6]
      ├─ [838.6 - 840.6]
      ├─ [840.6 - 842.6]
      ├─ [842.6 - 844.6]
      ├─ [844.6 - 846.6]
      ├─ [846.6 - 848.6]
      ├─ [848.6 - 850.6]
      ├─ [850.6 - 852.6]
      ├─ [852.6 - 854.6]
      ├─ [854.6 - 856.6]
      ├─ [856.6 - 858.6]
      ├─ [858.6 - 860.6]
      ├─ [860.6 - 862.6]
      ├─ [862.6 - 864.6]
      ├─ [864.6 - 866.6]
      ├─ [866.6 - 868.6]
      ├─ [868.6 - 870.6]
      ├─ [870.6 - 872.6]
      ├─ [872.6 - 874.6]
      ├─ [874.6 - 876.6]
      ├─ [876.6 - 878.6]
      ├─ [878.6 - 880.7]
      ├─ [880.7 - 882.7]
      ├─ [882.7 - 884.7]
      ├─ [884.7 - 886.7]
      ├─ [886.7 - 888.7]
      ├─ [888.7 - 890.7]
      ├─ [890.7 - 892.7]
      ├─ [892.7 - 894.7]
      ├─ [894.7 - 896.7]
      ├─ [896.7 - 898.7]
      ├─ [898.7 - 900.7]
      ├─ [900.7 - 902.7]
      ├─ [902.7 - 904.7]
      ├─ [904.7 - 906.7]
      ├─ [906.7 - 908.7]
      ├─ [908.7 - 910.7]
      ├─ [910.7 - 912.7]
      ├─ [912.7 - 914.7]
      ├─ [914.7 - 916.7]
      ├─ [916.7 - 918.7]
      ├─ [918.7 - 920.7]
      ├─ [920.7 - 922.7]
      ├─ [922.7 - 924.7]
      ├─ [924.7 - 926.7]
      ├─ [926.7 - 928.7]
      ├─ [928.7 - 930.7]
      ├─ [930.7 - 932.7]
      ├─ [932.7 - 934.7]
      ├─ [934.7 - 936.7]
      ├─ [936.7 - 938.7]
      ├─ [938.7 - 940.7]
      ├─ [940.7 - 942.7]
      ├─ [942.7 - 944.7]
      ├─ [944.7 - 946.7]
      ├─ [946.7 - 948.7]
      ├─ [948.7 - 950.7]
      ├─ [950.7 - 952.7]
      ├─ [952.7 - 954.7]
      ├─ [954.7 - 956.7]
      ├─ [956.7 - 958.7]
      ├─ [958.7 - 960.7]
      ├─ [960.7 - 962.7]
      ├─ [962.7 - 964.7]
      ├─ [964.7 - 966.7]
      ├─ [966.7 - 968.7]
      ├─ [968.7 - 970.7]
      ├─ [970.7 - 972.7]
      ├─ [972.7 - 974.7]
      ├─ [974.7 - 976.7]
      ├─ [976.7 - 978.7]
      └─ [978.7 - 980.7]

Run: LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw
   ├─ Vendor: Thermo
   ├─ File: LFQ_Astral_DIA_15min_50ng_Condition_B_REP1
   ├─ Path: "\\tol-brandir\Masse\Public datasets\ProteoBench\Module_quant_DIA_Astral\LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw"
   ├─ Condition: Not Defined
   ├─ Replicate: 4
   ├─ HTRMS Version: 21.0.260602.94842
   ├─ Protein Databases Used
   │  └─ ProteoBenchFASTA_MixedSpecies_HYE
   │     ├─ Protein Entries: 31 889
   │     ├─ Original File: ProteoBenchFASTA_MixedSpecies_HYE.fasta
   │     ├─ Date Created: 24-February-2026 09:47:25 UTC +01:00 
   │     ├─ Date Modified: 01-August-2026 02:22:17 UTC +02:00 
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [380.4 - 382.4]
      ├─ [382.4 - 384.4]
      ├─ [384.4 - 386.4]
      ├─ [386.4 - 388.4]
      ├─ [388.4 - 390.4]
      ├─ [390.4 - 392.4]
      ├─ [392.4 - 394.4]
      ├─ [394.4 - 396.4]
      ├─ [396.4 - 398.4]
      ├─ [398.4 - 400.4]
      ├─ [400.4 - 402.4]
      ├─ [402.4 - 404.4]
      ├─ [404.4 - 406.4]
      ├─ [406.4 - 408.4]
      ├─ [408.4 - 410.4]
      ├─ [410.4 - 412.4]
      ├─ [412.4 - 414.4]
      ├─ [414.4 - 416.4]
      ├─ [416.4 - 418.4]
      ├─ [418.4 - 420.4]
      ├─ [420.4 - 422.4]
      ├─ [422.4 - 424.4]
      ├─ [424.4 - 426.4]
      ├─ [426.4 - 428.4]
      ├─ [428.4 - 430.4]
      ├─ [430.4 - 432.4]
      ├─ [432.4 - 434.4]
      ├─ [434.4 - 436.4]
      ├─ [436.4 - 438.4]
      ├─ [438.4 - 440.5]
      ├─ [440.5 - 442.5]
      ├─ [442.5 - 444.5]
      ├─ [444.5 - 446.5]
      ├─ [446.5 - 448.5]
      ├─ [448.5 - 450.5]
      ├─ [450.5 - 452.5]
      ├─ [452.5 - 454.5]
      ├─ [454.5 - 456.5]
      ├─ [456.5 - 458.5]
      ├─ [458.5 - 460.5]
      ├─ [460.5 - 462.5]
      ├─ [462.5 - 464.5]
      ├─ [464.5 - 466.5]
      ├─ [466.5 - 468.5]
      ├─ [468.5 - 470.5]
      ├─ [470.5 - 472.5]
      ├─ [472.5 - 474.5]
      ├─ [474.5 - 476.5]
      ├─ [476.5 - 478.5]
      ├─ [478.5 - 480.5]
      ├─ [480.5 - 482.5]
      ├─ [482.5 - 484.5]
      ├─ [484.5 - 486.5]
      ├─ [486.5 - 488.5]
      ├─ [488.5 - 490.5]
      ├─ [490.5 - 492.5]
      ├─ [492.5 - 494.5]
      ├─ [494.5 - 496.5]
      ├─ [496.5 - 498.5]
      ├─ [498.5 - 500.5]
      ├─ [500.5 - 502.5]
      ├─ [502.5 - 504.5]
      ├─ [504.5 - 506.5]
      ├─ [506.5 - 508.5]
      ├─ [508.5 - 510.5]
      ├─ [510.5 - 512.5]
      ├─ [512.5 - 514.5]
      ├─ [514.5 - 516.5]
      ├─ [516.5 - 518.5]
      ├─ [518.5 - 520.5]
      ├─ [520.5 - 522.5]
      ├─ [522.5 - 524.5]
      ├─ [524.5 - 526.5]
      ├─ [526.5 - 528.5]
      ├─ [528.5 - 530.5]
      ├─ [530.5 - 532.5]
      ├─ [532.5 - 534.5]
      ├─ [534.5 - 536.5]
      ├─ [536.5 - 538.5]
      ├─ [538.5 - 540.5]
      ├─ [540.5 - 542.5]
      ├─ [542.5 - 544.5]
      ├─ [544.5 - 546.5]
      ├─ [546.5 - 548.5]
      ├─ [548.5 - 550.5]
      ├─ [550.5 - 552.5]
      ├─ [552.5 - 554.5]
      ├─ [554.5 - 556.5]
      ├─ [556.5 - 558.5]
      ├─ [558.5 - 560.5]
      ├─ [560.5 - 562.5]
      ├─ [562.5 - 564.5]
      ├─ [564.5 - 566.5]
      ├─ [566.5 - 568.5]
      ├─ [568.5 - 570.5]
      ├─ [570.5 - 572.5]
      ├─ [572.5 - 574.5]
      ├─ [574.5 - 576.5]
      ├─ [576.5 - 578.5]
      ├─ [578.5 - 580.5]
      ├─ [580.5 - 582.5]
      ├─ [582.5 - 584.5]
      ├─ [584.5 - 586.5]
      ├─ [586.5 - 588.5]
      ├─ [588.5 - 590.5]
      ├─ [590.5 - 592.5]
      ├─ [592.5 - 594.5]
      ├─ [594.5 - 596.5]
      ├─ [596.5 - 598.5]
      ├─ [598.5 - 600.5]
      ├─ [600.5 - 602.5]
      ├─ [602.5 - 604.5]
      ├─ [604.5 - 606.5]
      ├─ [606.5 - 608.5]
      ├─ [608.5 - 610.5]
      ├─ [610.5 - 612.5]
      ├─ [612.5 - 614.5]
      ├─ [614.5 - 616.5]
      ├─ [616.5 - 618.5]
      ├─ [618.5 - 620.5]
      ├─ [620.5 - 622.5]
      ├─ [622.5 - 624.5]
      ├─ [624.5 - 626.5]
      ├─ [626.5 - 628.5]
      ├─ [628.5 - 630.5]
      ├─ [630.5 - 632.5]
      ├─ [632.5 - 634.5]
      ├─ [634.5 - 636.5]
      ├─ [636.5 - 638.5]
      ├─ [638.5 - 640.5]
      ├─ [640.5 - 642.5]
      ├─ [642.5 - 644.5]
      ├─ [644.5 - 646.5]
      ├─ [646.5 - 648.5]
      ├─ [648.5 - 650.5]
      ├─ [650.5 - 652.5]
      ├─ [652.5 - 654.5]
      ├─ [654.5 - 656.5]
      ├─ [656.5 - 658.5]
      ├─ [658.5 - 660.6]
      ├─ [660.6 - 662.6]
      ├─ [662.6 - 664.6]
      ├─ [664.6 - 666.6]
      ├─ [666.6 - 668.6]
      ├─ [668.6 - 670.6]
      ├─ [670.6 - 672.6]
      ├─ [672.6 - 674.6]
      ├─ [674.6 - 676.6]
      ├─ [676.6 - 678.6]
      ├─ [678.6 - 680.6]
      ├─ [680.6 - 682.6]
      ├─ [682.6 - 684.6]
      ├─ [684.6 - 686.6]
      ├─ [686.6 - 688.6]
      ├─ [688.6 - 690.6]
      ├─ [690.6 - 692.6]
      ├─ [692.6 - 694.6]
      ├─ [694.6 - 696.6]
      ├─ [696.6 - 698.6]
      ├─ [698.6 - 700.6]
      ├─ [700.6 - 702.6]
      ├─ [702.6 - 704.6]
      ├─ [704.6 - 706.6]
      ├─ [706.6 - 708.6]
      ├─ [708.6 - 710.6]
      ├─ [710.6 - 712.6]
      ├─ [712.6 - 714.6]
      ├─ [714.6 - 716.6]
      ├─ [716.6 - 718.6]
      ├─ [718.6 - 720.6]
      ├─ [720.6 - 722.6]
      ├─ [722.6 - 724.6]
      ├─ [724.6 - 726.6]
      ├─ [726.6 - 728.6]
      ├─ [728.6 - 730.6]
      ├─ [730.6 - 732.6]
      ├─ [732.6 - 734.6]
      ├─ [734.6 - 736.6]
      ├─ [736.6 - 738.6]
      ├─ [738.6 - 740.6]
      ├─ [740.6 - 742.6]
      ├─ [742.6 - 744.6]
      ├─ [744.6 - 746.6]
      ├─ [746.6 - 748.6]
      ├─ [748.6 - 750.6]
      ├─ [750.6 - 752.6]
      ├─ [752.6 - 754.6]
      ├─ [754.6 - 756.6]
      ├─ [756.6 - 758.6]
      ├─ [758.6 - 760.6]
      ├─ [760.6 - 762.6]
      ├─ [762.6 - 764.6]
      ├─ [764.6 - 766.6]
      ├─ [766.6 - 768.6]
      ├─ [768.6 - 770.6]
      ├─ [770.6 - 772.6]
      ├─ [772.6 - 774.6]
      ├─ [774.6 - 776.6]
      ├─ [776.6 - 778.6]
      ├─ [778.6 - 780.6]
      ├─ [780.6 - 782.6]
      ├─ [782.6 - 784.6]
      ├─ [784.6 - 786.6]
      ├─ [786.6 - 788.6]
      ├─ [788.6 - 790.6]
      ├─ [790.6 - 792.6]
      ├─ [792.6 - 794.6]
      ├─ [794.6 - 796.6]
      ├─ [796.6 - 798.6]
      ├─ [798.6 - 800.6]
      ├─ [800.6 - 802.6]
      ├─ [802.6 - 804.6]
      ├─ [804.6 - 806.6]
      ├─ [806.6 - 808.6]
      ├─ [808.6 - 810.6]
      ├─ [810.6 - 812.6]
      ├─ [812.6 - 814.6]
      ├─ [814.6 - 816.6]
      ├─ [816.6 - 818.6]
      ├─ [818.6 - 820.6]
      ├─ [820.6 - 822.6]
      ├─ [822.6 - 824.6]
      ├─ [824.6 - 826.6]
      ├─ [826.6 - 828.6]
      ├─ [828.6 - 830.6]
      ├─ [830.6 - 832.6]
      ├─ [832.6 - 834.6]
      ├─ [834.6 - 836.6]
      ├─ [836.6 - 838.6]
      ├─ [838.6 - 840.6]
      ├─ [840.6 - 842.6]
      ├─ [842.6 - 844.6]
      ├─ [844.6 - 846.6]
      ├─ [846.6 - 848.6]
      ├─ [848.6 - 850.6]
      ├─ [850.6 - 852.6]
      ├─ [852.6 - 854.6]
      ├─ [854.6 - 856.6]
      ├─ [856.6 - 858.6]
      ├─ [858.6 - 860.6]
      ├─ [860.6 - 862.6]
      ├─ [862.6 - 864.6]
      ├─ [864.6 - 866.6]
      ├─ [866.6 - 868.6]
      ├─ [868.6 - 870.6]
      ├─ [870.6 - 872.6]
      ├─ [872.6 - 874.6]
      ├─ [874.6 - 876.6]
      ├─ [876.6 - 878.6]
      ├─ [878.6 - 880.7]
      ├─ [880.7 - 882.7]
      ├─ [882.7 - 884.7]
      ├─ [884.7 - 886.7]
      ├─ [886.7 - 888.7]
      ├─ [888.7 - 890.7]
      ├─ [890.7 - 892.7]
      ├─ [892.7 - 894.7]
      ├─ [894.7 - 896.7]
      ├─ [896.7 - 898.7]
      ├─ [898.7 - 900.7]
      ├─ [900.7 - 902.7]
      ├─ [902.7 - 904.7]
      ├─ [904.7 - 906.7]
      ├─ [906.7 - 908.7]
      ├─ [908.7 - 910.7]
      ├─ [910.7 - 912.7]
      ├─ [912.7 - 914.7]
      ├─ [914.7 - 916.7]
      ├─ [916.7 - 918.7]
      ├─ [918.7 - 920.7]
      ├─ [920.7 - 922.7]
      ├─ [922.7 - 924.7]
      ├─ [924.7 - 926.7]
      ├─ [926.7 - 928.7]
      ├─ [928.7 - 930.7]
      ├─ [930.7 - 932.7]
      ├─ [932.7 - 934.7]
      ├─ [934.7 - 936.7]
      ├─ [936.7 - 938.7]
      ├─ [938.7 - 940.7]
      ├─ [940.7 - 942.7]
      ├─ [942.7 - 944.7]
      ├─ [944.7 - 946.7]
      ├─ [946.7 - 948.7]
      ├─ [948.7 - 950.7]
      ├─ [950.7 - 952.7]
      ├─ [952.7 - 954.7]
      ├─ [954.7 - 956.7]
      ├─ [956.7 - 958.7]
      ├─ [958.7 - 960.7]
      ├─ [960.7 - 962.7]
      ├─ [962.7 - 964.7]
      ├─ [964.7 - 966.7]
      ├─ [966.7 - 968.7]
      ├─ [968.7 - 970.7]
      ├─ [970.7 - 972.7]
      ├─ [972.7 - 974.7]
      ├─ [974.7 - 976.7]
      ├─ [976.7 - 978.7]
      └─ [978.7 - 980.7]

Run: LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw
   ├─ Vendor: Thermo
   ├─ File: LFQ_Astral_DIA_15min_50ng_Condition_B_REP2
   ├─ Path: "\\tol-brandir\Masse\Public datasets\ProteoBench\Module_quant_DIA_Astral\LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw"
   ├─ Condition: Not Defined
   ├─ Replicate: 5
   ├─ HTRMS Version: 21.0.260602.94842
   ├─ Protein Databases Used
   │  └─ ProteoBenchFASTA_MixedSpecies_HYE
   │     ├─ Protein Entries: 31 889
   │     ├─ Original File: ProteoBenchFASTA_MixedSpecies_HYE.fasta
   │     ├─ Date Created: 24-February-2026 09:47:25 UTC +01:00 
   │     ├─ Date Modified: 01-August-2026 02:22:17 UTC +02:00 
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [380.4 - 382.4]
      ├─ [382.4 - 384.4]
      ├─ [384.4 - 386.4]
      ├─ [386.4 - 388.4]
      ├─ [388.4 - 390.4]
      ├─ [390.4 - 392.4]
      ├─ [392.4 - 394.4]
      ├─ [394.4 - 396.4]
      ├─ [396.4 - 398.4]
      ├─ [398.4 - 400.4]
      ├─ [400.4 - 402.4]
      ├─ [402.4 - 404.4]
      ├─ [404.4 - 406.4]
      ├─ [406.4 - 408.4]
      ├─ [408.4 - 410.4]
      ├─ [410.4 - 412.4]
      ├─ [412.4 - 414.4]
      ├─ [414.4 - 416.4]
      ├─ [416.4 - 418.4]
      ├─ [418.4 - 420.4]
      ├─ [420.4 - 422.4]
      ├─ [422.4 - 424.4]
      ├─ [424.4 - 426.4]
      ├─ [426.4 - 428.4]
      ├─ [428.4 - 430.4]
      ├─ [430.4 - 432.4]
      ├─ [432.4 - 434.4]
      ├─ [434.4 - 436.4]
      ├─ [436.4 - 438.4]
      ├─ [438.4 - 440.5]
      ├─ [440.5 - 442.5]
      ├─ [442.5 - 444.5]
      ├─ [444.5 - 446.5]
      ├─ [446.5 - 448.5]
      ├─ [448.5 - 450.5]
      ├─ [450.5 - 452.5]
      ├─ [452.5 - 454.5]
      ├─ [454.5 - 456.5]
      ├─ [456.5 - 458.5]
      ├─ [458.5 - 460.5]
      ├─ [460.5 - 462.5]
      ├─ [462.5 - 464.5]
      ├─ [464.5 - 466.5]
      ├─ [466.5 - 468.5]
      ├─ [468.5 - 470.5]
      ├─ [470.5 - 472.5]
      ├─ [472.5 - 474.5]
      ├─ [474.5 - 476.5]
      ├─ [476.5 - 478.5]
      ├─ [478.5 - 480.5]
      ├─ [480.5 - 482.5]
      ├─ [482.5 - 484.5]
      ├─ [484.5 - 486.5]
      ├─ [486.5 - 488.5]
      ├─ [488.5 - 490.5]
      ├─ [490.5 - 492.5]
      ├─ [492.5 - 494.5]
      ├─ [494.5 - 496.5]
      ├─ [496.5 - 498.5]
      ├─ [498.5 - 500.5]
      ├─ [500.5 - 502.5]
      ├─ [502.5 - 504.5]
      ├─ [504.5 - 506.5]
      ├─ [506.5 - 508.5]
      ├─ [508.5 - 510.5]
      ├─ [510.5 - 512.5]
      ├─ [512.5 - 514.5]
      ├─ [514.5 - 516.5]
      ├─ [516.5 - 518.5]
      ├─ [518.5 - 520.5]
      ├─ [520.5 - 522.5]
      ├─ [522.5 - 524.5]
      ├─ [524.5 - 526.5]
      ├─ [526.5 - 528.5]
      ├─ [528.5 - 530.5]
      ├─ [530.5 - 532.5]
      ├─ [532.5 - 534.5]
      ├─ [534.5 - 536.5]
      ├─ [536.5 - 538.5]
      ├─ [538.5 - 540.5]
      ├─ [540.5 - 542.5]
      ├─ [542.5 - 544.5]
      ├─ [544.5 - 546.5]
      ├─ [546.5 - 548.5]
      ├─ [548.5 - 550.5]
      ├─ [550.5 - 552.5]
      ├─ [552.5 - 554.5]
      ├─ [554.5 - 556.5]
      ├─ [556.5 - 558.5]
      ├─ [558.5 - 560.5]
      ├─ [560.5 - 562.5]
      ├─ [562.5 - 564.5]
      ├─ [564.5 - 566.5]
      ├─ [566.5 - 568.5]
      ├─ [568.5 - 570.5]
      ├─ [570.5 - 572.5]
      ├─ [572.5 - 574.5]
      ├─ [574.5 - 576.5]
      ├─ [576.5 - 578.5]
      ├─ [578.5 - 580.5]
      ├─ [580.5 - 582.5]
      ├─ [582.5 - 584.5]
      ├─ [584.5 - 586.5]
      ├─ [586.5 - 588.5]
      ├─ [588.5 - 590.5]
      ├─ [590.5 - 592.5]
      ├─ [592.5 - 594.5]
      ├─ [594.5 - 596.5]
      ├─ [596.5 - 598.5]
      ├─ [598.5 - 600.5]
      ├─ [600.5 - 602.5]
      ├─ [602.5 - 604.5]
      ├─ [604.5 - 606.5]
      ├─ [606.5 - 608.5]
      ├─ [608.5 - 610.5]
      ├─ [610.5 - 612.5]
      ├─ [612.5 - 614.5]
      ├─ [614.5 - 616.5]
      ├─ [616.5 - 618.5]
      ├─ [618.5 - 620.5]
      ├─ [620.5 - 622.5]
      ├─ [622.5 - 624.5]
      ├─ [624.5 - 626.5]
      ├─ [626.5 - 628.5]
      ├─ [628.5 - 630.5]
      ├─ [630.5 - 632.5]
      ├─ [632.5 - 634.5]
      ├─ [634.5 - 636.5]
      ├─ [636.5 - 638.5]
      ├─ [638.5 - 640.5]
      ├─ [640.5 - 642.5]
      ├─ [642.5 - 644.5]
      ├─ [644.5 - 646.5]
      ├─ [646.5 - 648.5]
      ├─ [648.5 - 650.5]
      ├─ [650.5 - 652.5]
      ├─ [652.5 - 654.5]
      ├─ [654.5 - 656.5]
      ├─ [656.5 - 658.5]
      ├─ [658.5 - 660.6]
      ├─ [660.6 - 662.6]
      ├─ [662.6 - 664.6]
      ├─ [664.6 - 666.6]
      ├─ [666.6 - 668.6]
      ├─ [668.6 - 670.6]
      ├─ [670.6 - 672.6]
      ├─ [672.6 - 674.6]
      ├─ [674.6 - 676.6]
      ├─ [676.6 - 678.6]
      ├─ [678.6 - 680.6]
      ├─ [680.6 - 682.6]
      ├─ [682.6 - 684.6]
      ├─ [684.6 - 686.6]
      ├─ [686.6 - 688.6]
      ├─ [688.6 - 690.6]
      ├─ [690.6 - 692.6]
      ├─ [692.6 - 694.6]
      ├─ [694.6 - 696.6]
      ├─ [696.6 - 698.6]
      ├─ [698.6 - 700.6]
      ├─ [700.6 - 702.6]
      ├─ [702.6 - 704.6]
      ├─ [704.6 - 706.6]
      ├─ [706.6 - 708.6]
      ├─ [708.6 - 710.6]
      ├─ [710.6 - 712.6]
      ├─ [712.6 - 714.6]
      ├─ [714.6 - 716.6]
      ├─ [716.6 - 718.6]
      ├─ [718.6 - 720.6]
      ├─ [720.6 - 722.6]
      ├─ [722.6 - 724.6]
      ├─ [724.6 - 726.6]
      ├─ [726.6 - 728.6]
      ├─ [728.6 - 730.6]
      ├─ [730.6 - 732.6]
      ├─ [732.6 - 734.6]
      ├─ [734.6 - 736.6]
      ├─ [736.6 - 738.6]
      ├─ [738.6 - 740.6]
      ├─ [740.6 - 742.6]
      ├─ [742.6 - 744.6]
      ├─ [744.6 - 746.6]
      ├─ [746.6 - 748.6]
      ├─ [748.6 - 750.6]
      ├─ [750.6 - 752.6]
      ├─ [752.6 - 754.6]
      ├─ [754.6 - 756.6]
      ├─ [756.6 - 758.6]
      ├─ [758.6 - 760.6]
      ├─ [760.6 - 762.6]
      ├─ [762.6 - 764.6]
      ├─ [764.6 - 766.6]
      ├─ [766.6 - 768.6]
      ├─ [768.6 - 770.6]
      ├─ [770.6 - 772.6]
      ├─ [772.6 - 774.6]
      ├─ [774.6 - 776.6]
      ├─ [776.6 - 778.6]
      ├─ [778.6 - 780.6]
      ├─ [780.6 - 782.6]
      ├─ [782.6 - 784.6]
      ├─ [784.6 - 786.6]
      ├─ [786.6 - 788.6]
      ├─ [788.6 - 790.6]
      ├─ [790.6 - 792.6]
      ├─ [792.6 - 794.6]
      ├─ [794.6 - 796.6]
      ├─ [796.6 - 798.6]
      ├─ [798.6 - 800.6]
      ├─ [800.6 - 802.6]
      ├─ [802.6 - 804.6]
      ├─ [804.6 - 806.6]
      ├─ [806.6 - 808.6]
      ├─ [808.6 - 810.6]
      ├─ [810.6 - 812.6]
      ├─ [812.6 - 814.6]
      ├─ [814.6 - 816.6]
      ├─ [816.6 - 818.6]
      ├─ [818.6 - 820.6]
      ├─ [820.6 - 822.6]
      ├─ [822.6 - 824.6]
      ├─ [824.6 - 826.6]
      ├─ [826.6 - 828.6]
      ├─ [828.6 - 830.6]
      ├─ [830.6 - 832.6]
      ├─ [832.6 - 834.6]
      ├─ [834.6 - 836.6]
      ├─ [836.6 - 838.6]
      ├─ [838.6 - 840.6]
      ├─ [840.6 - 842.6]
      ├─ [842.6 - 844.6]
      ├─ [844.6 - 846.6]
      ├─ [846.6 - 848.6]
      ├─ [848.6 - 850.6]
      ├─ [850.6 - 852.6]
      ├─ [852.6 - 854.6]
      ├─ [854.6 - 856.6]
      ├─ [856.6 - 858.6]
      ├─ [858.6 - 860.6]
      ├─ [860.6 - 862.6]
      ├─ [862.6 - 864.6]
      ├─ [864.6 - 866.6]
      ├─ [866.6 - 868.6]
      ├─ [868.6 - 870.6]
      ├─ [870.6 - 872.6]
      ├─ [872.6 - 874.6]
      ├─ [874.6 - 876.6]
      ├─ [876.6 - 878.6]
      ├─ [878.6 - 880.7]
      ├─ [880.7 - 882.7]
      ├─ [882.7 - 884.7]
      ├─ [884.7 - 886.7]
      ├─ [886.7 - 888.7]
      ├─ [888.7 - 890.7]
      ├─ [890.7 - 892.7]
      ├─ [892.7 - 894.7]
      ├─ [894.7 - 896.7]
      ├─ [896.7 - 898.7]
      ├─ [898.7 - 900.7]
      ├─ [900.7 - 902.7]
      ├─ [902.7 - 904.7]
      ├─ [904.7 - 906.7]
      ├─ [906.7 - 908.7]
      ├─ [908.7 - 910.7]
      ├─ [910.7 - 912.7]
      ├─ [912.7 - 914.7]
      ├─ [914.7 - 916.7]
      ├─ [916.7 - 918.7]
      ├─ [918.7 - 920.7]
      ├─ [920.7 - 922.7]
      ├─ [922.7 - 924.7]
      ├─ [924.7 - 926.7]
      ├─ [926.7 - 928.7]
      ├─ [928.7 - 930.7]
      ├─ [930.7 - 932.7]
      ├─ [932.7 - 934.7]
      ├─ [934.7 - 936.7]
      ├─ [936.7 - 938.7]
      ├─ [938.7 - 940.7]
      ├─ [940.7 - 942.7]
      ├─ [942.7 - 944.7]
      ├─ [944.7 - 946.7]
      ├─ [946.7 - 948.7]
      ├─ [948.7 - 950.7]
      ├─ [950.7 - 952.7]
      ├─ [952.7 - 954.7]
      ├─ [954.7 - 956.7]
      ├─ [956.7 - 958.7]
      ├─ [958.7 - 960.7]
      ├─ [960.7 - 962.7]
      ├─ [962.7 - 964.7]
      ├─ [964.7 - 966.7]
      ├─ [966.7 - 968.7]
      ├─ [968.7 - 970.7]
      ├─ [970.7 - 972.7]
      ├─ [972.7 - 974.7]
      ├─ [974.7 - 976.7]
      ├─ [976.7 - 978.7]
      └─ [978.7 - 980.7]

Run: LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw
   ├─ Vendor: Thermo
   ├─ File: LFQ_Astral_DIA_15min_50ng_Condition_B_REP3
   ├─ Path: "\\tol-brandir\Masse\Public datasets\ProteoBench\Module_quant_DIA_Astral\LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw"
   ├─ Condition: Not Defined
   ├─ Replicate: 6
   ├─ HTRMS Version: 21.0.260602.94842
   ├─ Protein Databases Used
   │  └─ ProteoBenchFASTA_MixedSpecies_HYE
   │     ├─ Protein Entries: 31 889
   │     ├─ Original File: ProteoBenchFASTA_MixedSpecies_HYE.fasta
   │     ├─ Date Created: 24-February-2026 09:47:25 UTC +01:00 
   │     ├─ Date Modified: 01-August-2026 02:22:17 UTC +02:00 
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [380.4 - 382.4]
      ├─ [382.4 - 384.4]
      ├─ [384.4 - 386.4]
      ├─ [386.4 - 388.4]
      ├─ [388.4 - 390.4]
      ├─ [390.4 - 392.4]
      ├─ [392.4 - 394.4]
      ├─ [394.4 - 396.4]
      ├─ [396.4 - 398.4]
      ├─ [398.4 - 400.4]
      ├─ [400.4 - 402.4]
      ├─ [402.4 - 404.4]
      ├─ [404.4 - 406.4]
      ├─ [406.4 - 408.4]
      ├─ [408.4 - 410.4]
      ├─ [410.4 - 412.4]
      ├─ [412.4 - 414.4]
      ├─ [414.4 - 416.4]
      ├─ [416.4 - 418.4]
      ├─ [418.4 - 420.4]
      ├─ [420.4 - 422.4]
      ├─ [422.4 - 424.4]
      ├─ [424.4 - 426.4]
      ├─ [426.4 - 428.4]
      ├─ [428.4 - 430.4]
      ├─ [430.4 - 432.4]
      ├─ [432.4 - 434.4]
      ├─ [434.4 - 436.4]
      ├─ [436.4 - 438.4]
      ├─ [438.4 - 440.5]
      ├─ [440.5 - 442.5]
      ├─ [442.5 - 444.5]
      ├─ [444.5 - 446.5]
      ├─ [446.5 - 448.5]
      ├─ [448.5 - 450.5]
      ├─ [450.5 - 452.5]
      ├─ [452.5 - 454.5]
      ├─ [454.5 - 456.5]
      ├─ [456.5 - 458.5]
      ├─ [458.5 - 460.5]
      ├─ [460.5 - 462.5]
      ├─ [462.5 - 464.5]
      ├─ [464.5 - 466.5]
      ├─ [466.5 - 468.5]
      ├─ [468.5 - 470.5]
      ├─ [470.5 - 472.5]
      ├─ [472.5 - 474.5]
      ├─ [474.5 - 476.5]
      ├─ [476.5 - 478.5]
      ├─ [478.5 - 480.5]
      ├─ [480.5 - 482.5]
      ├─ [482.5 - 484.5]
      ├─ [484.5 - 486.5]
      ├─ [486.5 - 488.5]
      ├─ [488.5 - 490.5]
      ├─ [490.5 - 492.5]
      ├─ [492.5 - 494.5]
      ├─ [494.5 - 496.5]
      ├─ [496.5 - 498.5]
      ├─ [498.5 - 500.5]
      ├─ [500.5 - 502.5]
      ├─ [502.5 - 504.5]
      ├─ [504.5 - 506.5]
      ├─ [506.5 - 508.5]
      ├─ [508.5 - 510.5]
      ├─ [510.5 - 512.5]
      ├─ [512.5 - 514.5]
      ├─ [514.5 - 516.5]
      ├─ [516.5 - 518.5]
      ├─ [518.5 - 520.5]
      ├─ [520.5 - 522.5]
      ├─ [522.5 - 524.5]
      ├─ [524.5 - 526.5]
      ├─ [526.5 - 528.5]
      ├─ [528.5 - 530.5]
      ├─ [530.5 - 532.5]
      ├─ [532.5 - 534.5]
      ├─ [534.5 - 536.5]
      ├─ [536.5 - 538.5]
      ├─ [538.5 - 540.5]
      ├─ [540.5 - 542.5]
      ├─ [542.5 - 544.5]
      ├─ [544.5 - 546.5]
      ├─ [546.5 - 548.5]
      ├─ [548.5 - 550.5]
      ├─ [550.5 - 552.5]
      ├─ [552.5 - 554.5]
      ├─ [554.5 - 556.5]
      ├─ [556.5 - 558.5]
      ├─ [558.5 - 560.5]
      ├─ [560.5 - 562.5]
      ├─ [562.5 - 564.5]
      ├─ [564.5 - 566.5]
      ├─ [566.5 - 568.5]
      ├─ [568.5 - 570.5]
      ├─ [570.5 - 572.5]
      ├─ [572.5 - 574.5]
      ├─ [574.5 - 576.5]
      ├─ [576.5 - 578.5]
      ├─ [578.5 - 580.5]
      ├─ [580.5 - 582.5]
      ├─ [582.5 - 584.5]
      ├─ [584.5 - 586.5]
      ├─ [586.5 - 588.5]
      ├─ [588.5 - 590.5]
      ├─ [590.5 - 592.5]
      ├─ [592.5 - 594.5]
      ├─ [594.5 - 596.5]
      ├─ [596.5 - 598.5]
      ├─ [598.5 - 600.5]
      ├─ [600.5 - 602.5]
      ├─ [602.5 - 604.5]
      ├─ [604.5 - 606.5]
      ├─ [606.5 - 608.5]
      ├─ [608.5 - 610.5]
      ├─ [610.5 - 612.5]
      ├─ [612.5 - 614.5]
      ├─ [614.5 - 616.5]
      ├─ [616.5 - 618.5]
      ├─ [618.5 - 620.5]
      ├─ [620.5 - 622.5]
      ├─ [622.5 - 624.5]
      ├─ [624.5 - 626.5]
      ├─ [626.5 - 628.5]
      ├─ [628.5 - 630.5]
      ├─ [630.5 - 632.5]
      ├─ [632.5 - 634.5]
      ├─ [634.5 - 636.5]
      ├─ [636.5 - 638.5]
      ├─ [638.5 - 640.5]
      ├─ [640.5 - 642.5]
      ├─ [642.5 - 644.5]
      ├─ [644.5 - 646.5]
      ├─ [646.5 - 648.5]
      ├─ [648.5 - 650.5]
      ├─ [650.5 - 652.5]
      ├─ [652.5 - 654.5]
      ├─ [654.5 - 656.5]
      ├─ [656.5 - 658.5]
      ├─ [658.5 - 660.6]
      ├─ [660.6 - 662.6]
      ├─ [662.6 - 664.6]
      ├─ [664.6 - 666.6]
      ├─ [666.6 - 668.6]
      ├─ [668.6 - 670.6]
      ├─ [670.6 - 672.6]
      ├─ [672.6 - 674.6]
      ├─ [674.6 - 676.6]
      ├─ [676.6 - 678.6]
      ├─ [678.6 - 680.6]
      ├─ [680.6 - 682.6]
      ├─ [682.6 - 684.6]
      ├─ [684.6 - 686.6]
      ├─ [686.6 - 688.6]
      ├─ [688.6 - 690.6]
      ├─ [690.6 - 692.6]
      ├─ [692.6 - 694.6]
      ├─ [694.6 - 696.6]
      ├─ [696.6 - 698.6]
      ├─ [698.6 - 700.6]
      ├─ [700.6 - 702.6]
      ├─ [702.6 - 704.6]
      ├─ [704.6 - 706.6]
      ├─ [706.6 - 708.6]
      ├─ [708.6 - 710.6]
      ├─ [710.6 - 712.6]
      ├─ [712.6 - 714.6]
      ├─ [714.6 - 716.6]
      ├─ [716.6 - 718.6]
      ├─ [718.6 - 720.6]
      ├─ [720.6 - 722.6]
      ├─ [722.6 - 724.6]
      ├─ [724.6 - 726.6]
      ├─ [726.6 - 728.6]
      ├─ [728.6 - 730.6]
      ├─ [730.6 - 732.6]
      ├─ [732.6 - 734.6]
      ├─ [734.6 - 736.6]
      ├─ [736.6 - 738.6]
      ├─ [738.6 - 740.6]
      ├─ [740.6 - 742.6]
      ├─ [742.6 - 744.6]
      ├─ [744.6 - 746.6]
      ├─ [746.6 - 748.6]
      ├─ [748.6 - 750.6]
      ├─ [750.6 - 752.6]
      ├─ [752.6 - 754.6]
      ├─ [754.6 - 756.6]
      ├─ [756.6 - 758.6]
      ├─ [758.6 - 760.6]
      ├─ [760.6 - 762.6]
      ├─ [762.6 - 764.6]
      ├─ [764.6 - 766.6]
      ├─ [766.6 - 768.6]
      ├─ [768.6 - 770.6]
      ├─ [770.6 - 772.6]
      ├─ [772.6 - 774.6]
      ├─ [774.6 - 776.6]
      ├─ [776.6 - 778.6]
      ├─ [778.6 - 780.6]
      ├─ [780.6 - 782.6]
      ├─ [782.6 - 784.6]
      ├─ [784.6 - 786.6]
      ├─ [786.6 - 788.6]
      ├─ [788.6 - 790.6]
      ├─ [790.6 - 792.6]
      ├─ [792.6 - 794.6]
      ├─ [794.6 - 796.6]
      ├─ [796.6 - 798.6]
      ├─ [798.6 - 800.6]
      ├─ [800.6 - 802.6]
      ├─ [802.6 - 804.6]
      ├─ [804.6 - 806.6]
      ├─ [806.6 - 808.6]
      ├─ [808.6 - 810.6]
      ├─ [810.6 - 812.6]
      ├─ [812.6 - 814.6]
      ├─ [814.6 - 816.6]
      ├─ [816.6 - 818.6]
      ├─ [818.6 - 820.6]
      ├─ [820.6 - 822.6]
      ├─ [822.6 - 824.6]
      ├─ [824.6 - 826.6]
      ├─ [826.6 - 828.6]
      ├─ [828.6 - 830.6]
      ├─ [830.6 - 832.6]
      ├─ [832.6 - 834.6]
      ├─ [834.6 - 836.6]
      ├─ [836.6 - 838.6]
      ├─ [838.6 - 840.6]
      ├─ [840.6 - 842.6]
      ├─ [842.6 - 844.6]
      ├─ [844.6 - 846.6]
      ├─ [846.6 - 848.6]
      ├─ [848.6 - 850.6]
      ├─ [850.6 - 852.6]
      ├─ [852.6 - 854.6]
      ├─ [854.6 - 856.6]
      ├─ [856.6 - 858.6]
      ├─ [858.6 - 860.6]
      ├─ [860.6 - 862.6]
      ├─ [862.6 - 864.6]
      ├─ [864.6 - 866.6]
      ├─ [866.6 - 868.6]
      ├─ [868.6 - 870.6]
      ├─ [870.6 - 872.6]
      ├─ [872.6 - 874.6]
      ├─ [874.6 - 876.6]
      ├─ [876.6 - 878.6]
      ├─ [878.6 - 880.7]
      ├─ [880.7 - 882.7]
      ├─ [882.7 - 884.7]
      ├─ [884.7 - 886.7]
      ├─ [886.7 - 888.7]
      ├─ [888.7 - 890.7]
      ├─ [890.7 - 892.7]
      ├─ [892.7 - 894.7]
      ├─ [894.7 - 896.7]
      ├─ [896.7 - 898.7]
      ├─ [898.7 - 900.7]
      ├─ [900.7 - 902.7]
      ├─ [902.7 - 904.7]
      ├─ [904.7 - 906.7]
      ├─ [906.7 - 908.7]
      ├─ [908.7 - 910.7]
      ├─ [910.7 - 912.7]
      ├─ [912.7 - 914.7]
      ├─ [914.7 - 916.7]
      ├─ [916.7 - 918.7]
      ├─ [918.7 - 920.7]
      ├─ [920.7 - 922.7]
      ├─ [922.7 - 924.7]
      ├─ [924.7 - 926.7]
      ├─ [926.7 - 928.7]
      ├─ [928.7 - 930.7]
      ├─ [930.7 - 932.7]
      ├─ [932.7 - 934.7]
      ├─ [934.7 - 936.7]
      ├─ [936.7 - 938.7]
      ├─ [938.7 - 940.7]
      ├─ [940.7 - 942.7]
      ├─ [942.7 - 944.7]
      ├─ [944.7 - 946.7]
      ├─ [946.7 - 948.7]
      ├─ [948.7 - 950.7]
      ├─ [950.7 - 952.7]
      ├─ [952.7 - 954.7]
      ├─ [954.7 - 956.7]
      ├─ [956.7 - 958.7]
      ├─ [958.7 - 960.7]
      ├─ [960.7 - 962.7]
      ├─ [962.7 - 964.7]
      ├─ [964.7 - 966.7]
      ├─ [966.7 - 968.7]
      ├─ [968.7 - 970.7]
      ├─ [970.7 - 972.7]
      ├─ [972.7 - 974.7]
      ├─ [974.7 - 976.7]
      ├─ [976.7 - 978.7]
      └─ [978.7 - 980.7]

[END-SETUP]

[BEGIN-LOG]
INFO:    [31/07/2026 23:07:52] -> Initializing Pipeline...
INFO:    [31/07/2026 23:07:52] -> Preprocessing Run #1 of 6...
INFO:    [31/07/2026 23:07:52] -> Searching DIA with Pulsar...
INFO:    [31/07/2026 23:07:55] -> Initialize Pipeline...
INFO:    [31/07/2026 23:07:55] -> Initialize Pipeline
INFO:    [31/07/2026 23:08:10] -> Initialize Pipeline...
INFO:    [31/07/2026 23:08:10] -> Creating Experiment Environment
INFO:    [31/07/2026 23:08:10] -> SuperRun 1/6: Initializing (LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw)
INFO:    [31/07/2026 23:08:10] -> Run 1/6: Organizing Data from Run
INFO:    [31/07/2026 23:08:10] -> Run 1/6: Creating Calibration Search Space...
INFO:    [31/07/2026 23:08:12] -> Collecting Search Space Parameters...
INFO:    [31/07/2026 23:08:17] -> Creating the Search Space...
INFO:    [31/07/2026 23:08:24] -> Run 1/6: Creating Search Space...
INFO:    [31/07/2026 23:08:24] -> Collecting Search Space Parameters...
INFO:    [31/07/2026 23:08:51] -> Creating the Search Space...
INFO:    [31/07/2026 23:08:56] -> Run 1/6: MS2 Index Generation
INFO:    [31/07/2026 23:10:58] -> MS2 Index Generation Time: 2.04m
INFO:    [31/07/2026 23:10:58] -> Run 1/6: Method-Specific Pre-Processing...
INFO:    [31/07/2026 23:11:01] -> Initializing...
INFO:    [31/07/2026 23:11:57] -> Finalizing Scan Map...
INFO:    [31/07/2026 23:13:42] -> Processed in 2.7m
INFO:    [31/07/2026 23:13:50] -> Done
INFO:    [31/07/2026 23:13:57] -> Run 1/6: Process Raw File...
INFO:    [31/07/2026 23:14:00] -> Run 1/6: Preparing Partitions...
INFO:    [31/07/2026 23:14:00] -> Part 1/1 - Run 1/6: Preparing Calibration Searches...
INFO:    [31/07/2026 23:14:02] -> Part 1/1 - Run 1/6: First Pass Calibration Search...
INFO:    [31/07/2026 23:14:19] -> Part 1/1 - Run 1/6: Calibration Search...
INFO:    [31/07/2026 23:14:33] -> The number of PSMs identified during calibration with FDR <= 0.01 is 5765 [14.2s]
INFO:    [31/07/2026 23:15:00] -> Part 1/1 - Run 1/6: Preparing Main Search...
INFO:    [31/07/2026 23:15:01] -> Part 1/1 - Run 1/6: Main Search...
INFO:    [31/07/2026 23:17:58] -> Extracting 398220 MS1 XICs
INFO:    [31/07/2026 23:22:29] -> Run 1/6: Score Post-Processing
INFO:    [31/07/2026 23:25:22] -> Run 1/6: Cleaning Up Run...
INFO:    [31/07/2026 23:25:26] -> SuperRun 2/6: Initializing (LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw)
INFO:    [31/07/2026 23:25:26] -> Run 2/6: Organizing Data from Run
INFO:    [31/07/2026 23:25:26] -> Run 2/6: Creating Calibration Search Space...
INFO:    [31/07/2026 23:25:26] -> Run 2/6: Creating Search Space...
INFO:    [31/07/2026 23:25:26] -> Run 2/6: MS2 Index Generation
INFO:    [31/07/2026 23:25:27] -> MS2 Index Generation Time: 1.27s
INFO:    [31/07/2026 23:25:27] -> Run 2/6: Method-Specific Pre-Processing...
INFO:    [31/07/2026 23:25:30] -> Initializing...
INFO:    [31/07/2026 23:26:19] -> Finalizing Scan Map...
INFO:    [31/07/2026 23:28:19] -> Processed in 2.8m
INFO:    [31/07/2026 23:28:23] -> Done
INFO:    [31/07/2026 23:28:31] -> Run 2/6: Process Raw File...
INFO:    [31/07/2026 23:28:36] -> Run 2/6: Preparing Partitions...
INFO:    [31/07/2026 23:28:36] -> Part 1/1 - Run 2/6: Preparing Calibration Searches...
INFO:    [31/07/2026 23:28:37] -> Part 1/1 - Run 2/6: First Pass Calibration Search...
INFO:    [31/07/2026 23:29:02] -> Part 1/1 - Run 2/6: Calibration Search...
INFO:    [31/07/2026 23:29:15] -> The number of PSMs identified during calibration with FDR <= 0.01 is 5772 [13.8s]
INFO:    [31/07/2026 23:31:15] -> Part 1/1 - Run 2/6: Preparing Main Search...
INFO:    [31/07/2026 23:31:17] -> Part 1/1 - Run 2/6: Main Search...
INFO:    [31/07/2026 23:38:38] -> Extracting 396276 MS1 XICs
INFO:    [31/07/2026 23:43:32] -> Run 2/6: Score Post-Processing
INFO:    [31/07/2026 23:46:54] -> Run 2/6: Cleaning Up Run...
INFO:    [31/07/2026 23:46:54] -> SuperRun 3/6: Initializing (LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw)
INFO:    [31/07/2026 23:46:54] -> Run 3/6: Organizing Data from Run
INFO:    [31/07/2026 23:46:54] -> Run 3/6: Creating Calibration Search Space...
INFO:    [31/07/2026 23:46:54] -> Run 3/6: Creating Search Space...
INFO:    [31/07/2026 23:46:54] -> Run 3/6: MS2 Index Generation
INFO:    [31/07/2026 23:46:56] -> MS2 Index Generation Time: 1.35s
INFO:    [31/07/2026 23:46:56] -> Run 3/6: Method-Specific Pre-Processing...
INFO:    [31/07/2026 23:46:58] -> Initializing...
INFO:    [31/07/2026 23:47:56] -> Finalizing Scan Map...
INFO:    [31/07/2026 23:49:51] -> Processed in 2.9m
INFO:    [31/07/2026 23:49:57] -> Done
INFO:    [31/07/2026 23:50:05] -> Run 3/6: Process Raw File...
INFO:    [31/07/2026 23:50:09] -> Run 3/6: Preparing Partitions...
INFO:    [31/07/2026 23:50:09] -> Part 1/1 - Run 3/6: Preparing Calibration Searches...
INFO:    [31/07/2026 23:50:10] -> Part 1/1 - Run 3/6: First Pass Calibration Search...
INFO:    [31/07/2026 23:50:33] -> Part 1/1 - Run 3/6: Calibration Search...
INFO:    [31/07/2026 23:50:50] -> The number of PSMs identified during calibration with FDR <= 0.01 is 5884 [17.4s]
INFO:    [31/07/2026 23:52:49] -> Part 1/1 - Run 3/6: Preparing Main Search...
INFO:    [31/07/2026 23:52:50] -> Part 1/1 - Run 3/6: Main Search...
INFO:    [31/07/2026 23:59:42] -> Extracting 432059 MS1 XICs
INFO:    [01/08/2026 00:04:53] -> Run 3/6: Score Post-Processing
INFO:    [01/08/2026 00:08:20] -> Run 3/6: Cleaning Up Run...
INFO:    [01/08/2026 00:08:20] -> SuperRun 4/6: Initializing (LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw)
INFO:    [01/08/2026 00:08:20] -> Run 4/6: Organizing Data from Run
INFO:    [01/08/2026 00:08:20] -> Run 4/6: Creating Calibration Search Space...
INFO:    [01/08/2026 00:08:20] -> Run 4/6: Creating Search Space...
INFO:    [01/08/2026 00:08:20] -> Run 4/6: MS2 Index Generation
INFO:    [01/08/2026 00:08:21] -> MS2 Index Generation Time: 1.31s
INFO:    [01/08/2026 00:08:21] -> Run 4/6: Method-Specific Pre-Processing...
INFO:    [01/08/2026 00:08:24] -> Initializing...
INFO:    [01/08/2026 00:09:23] -> Finalizing Scan Map...
INFO:    [01/08/2026 00:11:25] -> Processed in 3m
INFO:    [01/08/2026 00:11:30] -> Done
INFO:    [01/08/2026 00:11:39] -> Run 4/6: Process Raw File...
INFO:    [01/08/2026 00:11:43] -> Run 4/6: Preparing Partitions...
INFO:    [01/08/2026 00:11:43] -> Part 1/1 - Run 4/6: Preparing Calibration Searches...
INFO:    [01/08/2026 00:11:44] -> Part 1/1 - Run 4/6: First Pass Calibration Search...
INFO:    [01/08/2026 00:12:05] -> Part 1/1 - Run 4/6: Calibration Search...
INFO:    [01/08/2026 00:12:22] -> The number of PSMs identified during calibration with FDR <= 0.01 is 5672 [16.9s]
INFO:    [01/08/2026 00:14:16] -> Part 1/1 - Run 4/6: Preparing Main Search...
INFO:    [01/08/2026 00:14:17] -> Part 1/1 - Run 4/6: Main Search...
INFO:    [01/08/2026 00:19:04] -> Extracting 387743 MS1 XICs
INFO:    [01/08/2026 00:23:30] -> Run 4/6: Score Post-Processing
INFO:    [01/08/2026 00:25:56] -> Run 4/6: Cleaning Up Run...
INFO:    [01/08/2026 00:25:56] -> SuperRun 5/6: Initializing (LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw)
INFO:    [01/08/2026 00:25:56] -> Run 5/6: Organizing Data from Run
INFO:    [01/08/2026 00:25:56] -> Run 5/6: Creating Calibration Search Space...
INFO:    [01/08/2026 00:25:56] -> Run 5/6: Creating Search Space...
INFO:    [01/08/2026 00:25:56] -> Run 5/6: MS2 Index Generation
INFO:    [01/08/2026 00:25:58] -> MS2 Index Generation Time: 1.34s
INFO:    [01/08/2026 00:25:58] -> Run 5/6: Method-Specific Pre-Processing...
INFO:    [01/08/2026 00:26:00] -> Initializing...
INFO:    [01/08/2026 00:26:46] -> Finalizing Scan Map...
INFO:    [01/08/2026 00:28:05] -> Processed in 2.1m
INFO:    [01/08/2026 00:28:09] -> Done
INFO:    [01/08/2026 00:28:16] -> Run 5/6: Process Raw File...
INFO:    [01/08/2026 00:28:18] -> Run 5/6: Preparing Partitions...
INFO:    [01/08/2026 00:28:18] -> Part 1/1 - Run 5/6: Preparing Calibration Searches...
INFO:    [01/08/2026 00:28:20] -> Part 1/1 - Run 5/6: First Pass Calibration Search...
INFO:    [01/08/2026 00:28:32] -> Part 1/1 - Run 5/6: Calibration Search...
INFO:    [01/08/2026 00:28:38] -> The number of PSMs identified during calibration with FDR <= 0.01 is 5579 [6s]
INFO:    [01/08/2026 00:29:05] -> Part 1/1 - Run 5/6: Preparing Main Search...
INFO:    [01/08/2026 00:29:06] -> Part 1/1 - Run 5/6: Main Search...
INFO:    [01/08/2026 00:32:10] -> Extracting 389127 MS1 XICs
INFO:    [01/08/2026 00:36:38] -> Run 5/6: Score Post-Processing
INFO:    [01/08/2026 00:38:53] -> Run 5/6: Cleaning Up Run...
INFO:    [01/08/2026 00:38:53] -> SuperRun 6/6: Initializing (LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw)
INFO:    [01/08/2026 00:38:53] -> Run 6/6: Organizing Data from Run
INFO:    [01/08/2026 00:38:53] -> Run 6/6: Creating Calibration Search Space...
INFO:    [01/08/2026 00:38:53] -> Run 6/6: Creating Search Space...
INFO:    [01/08/2026 00:38:53] -> Run 6/6: MS2 Index Generation
INFO:    [01/08/2026 00:38:54] -> MS2 Index Generation Time: 1.32s
INFO:    [01/08/2026 00:38:55] -> Run 6/6: Method-Specific Pre-Processing...
INFO:    [01/08/2026 00:38:58] -> Initializing...
INFO:    [01/08/2026 00:39:47] -> Finalizing Scan Map...
INFO:    [01/08/2026 00:41:11] -> Processed in 2.2m
INFO:    [01/08/2026 00:41:15] -> Done
INFO:    [01/08/2026 00:41:22] -> Run 6/6: Process Raw File...
INFO:    [01/08/2026 00:41:25] -> Run 6/6: Preparing Partitions...
INFO:    [01/08/2026 00:41:25] -> Part 1/1 - Run 6/6: Preparing Calibration Searches...
INFO:    [01/08/2026 00:41:27] -> Part 1/1 - Run 6/6: First Pass Calibration Search...
INFO:    [01/08/2026 00:41:40] -> Part 1/1 - Run 6/6: Calibration Search...
INFO:    [01/08/2026 00:41:48] -> The number of PSMs identified during calibration with FDR <= 0.01 is 5563 [8.8s]
INFO:    [01/08/2026 00:42:30] -> Part 1/1 - Run 6/6: Preparing Main Search...
INFO:    [01/08/2026 00:42:32] -> Part 1/1 - Run 6/6: Main Search...
INFO:    [01/08/2026 00:45:37] -> Extracting 392278 MS1 XICs
INFO:    [01/08/2026 00:49:59] -> Run 6/6: Score Post-Processing
INFO:    [01/08/2026 00:52:42] -> Run 6/6: Cleaning Up Run...
INFO:    [01/08/2026 00:52:46] -> Remove Aborted Runs (if any) from the Experiment...
INFO:    [01/08/2026 00:52:46] -> PSM FDR...
INFO:    [01/08/2026 00:52:47] -> PSM FDR: 526.71ms
INFO:    [01/08/2026 00:52:47] -> Converting to non-redundant data structure...
INFO:    [01/08/2026 00:53:13] -> Performing Peptide FDR...
INFO:    [01/08/2026 00:53:18] -> Performing Protein Inference...
INFO:    [01/08/2026 00:53:21] -> Performing Protein FDR...
INFO:    [01/08/2026 00:53:23] -> Calculating Result Values at Run and Experiment Level...
INFO:    [01/08/2026 00:53:36] -> Pulsar identified 329075 PSMs, 72458 stripped sequences, 81117 peptide precursors, 7873 protein groups.
INFO:    [01/08/2026 00:53:36] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 00:53:36] -> iRT Calibration...
INFO:    [01/08/2026 00:53:42] -> Performing directDIA+ search fine tuning...
INFO:    [01/08/2026 01:05:54] -> Performing directDIA+ search...
INFO:    [01/08/2026 01:05:54] -> directDIA+ search: LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw
INFO:    [01/08/2026 01:21:07] -> directDIA+ search: LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw
INFO:    [01/08/2026 01:27:42] -> directDIA+ search: LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw
INFO:    [01/08/2026 01:34:31] -> directDIA+ search: LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw
INFO:    [01/08/2026 01:40:38] -> directDIA+ search: LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw
INFO:    [01/08/2026 01:48:31] -> directDIA+ search: LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw
INFO:    [01/08/2026 01:57:40] -> Total nr of Searched Peptides: 1 426 418 of 2 100 678
INFO:    [01/08/2026 01:57:40] -> Initializing Combined Protein Inference...
INFO:    [01/08/2026 02:13:32] -> Performing Protein Inference...
INFO:    [01/08/2026 02:13:37] -> Performing Protein FDR...
INFO:    [01/08/2026 02:13:38] -> Calculating Result Values at Run and Experiment Level...
INFO:    [01/08/2026 02:13:49] -> Pulsar identified 329065 PSMs, 72455 stripped sequences, 81114 peptide precursors, 7893 protein groups.
INFO:    [01/08/2026 02:13:49] -> Calculating Summary...
INFO:    [01/08/2026 02:13:53] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 02:13:54] -> Performing directDIA+ Post Processing...
INFO:    [01/08/2026 02:16:44] -> Combining Protein-Group FDR Results...
INFO:    [01/08/2026 02:16:45] -> Combined Protein-Group Identifications at 1% Qvalue: 12 470
INFO:    [01/08/2026 02:16:45] -> Writing experiment store..
INFO:    [01/08/2026 02:17:00] -> Assigning iRT Source...
INFO:    [01/08/2026 02:17:00] -> Calculating iRT...
INFO:    [01/08/2026 02:17:01] -> Cleaning Up Experiment...
INFO:    [01/08/2026 02:17:01] -> Summarizing Identifications
INFO:    [01/08/2026 02:18:27] -> Predicting Ion Mobility
INFO:    [01/08/2026 02:20:25] -> Calculating Median iRT
INFO:    [01/08/2026 02:20:28] -> Building BGS Protein Grouping...
INFO:    [01/08/2026 02:20:29] -> Digesting Fasta...
INFO:    [01/08/2026 02:20:34] -> Annotating Proteins...
INFO:    [01/08/2026 02:20:35] -> Grouping Proteins...
INFO:    [01/08/2026 02:20:39] -> Calculating Run Summary Statistics...
INFO:    [01/08/2026 02:20:49] -> Building Consensus Fragment Spectra...
INFO:    [01/08/2026 02:21:10] -> Selecting best fragment ions
INFO:    [01/08/2026 02:21:10] -> Condensing Global Results...
INFO:    [01/08/2026 02:22:33] -> Protein Groups: 11656 (11733), Protein Id: 11811 (11894), Modified Peptides: 127289, Precursors: 143509, Peptides: 125207, Fragments: 854798
INFO:    [01/08/2026 02:22:58] -> Initializing Experiment...
INFO:    [01/08/2026 02:22:58] -> Loading Spectral Libraries...
INFO:    [01/08/2026 02:56:48] -> Initialize Scoring...
INFO:    [01/08/2026 02:56:48] -> Generating Scan Map...
INFO:    [01/08/2026 02:56:48] -> Initializing Workpackages...
INFO:    [01/08/2026 02:56:48] -> Performing Basic Calibration...
INFO:    [01/08/2026 02:56:49] -> Calibration successful
INFO:    [01/08/2026 02:56:49] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 02:56:49] -> Calibration successful
INFO:    [01/08/2026 02:56:49] -> Correcting Gradient Fine Structure...
INFO:    [01/08/2026 02:56:54] -> Initializing Pipeline...
INFO:    [01/08/2026 02:56:54] -> Preprocessing Run #1 of 6...
INFO:    [01/08/2026 02:56:54] -> Initialize Scoring...
INFO:    [01/08/2026 02:56:54] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:57:01] -> Machine Learning...
INFO:    [01/08/2026 02:57:03] -> Pipeline executed in 8.82s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:57:03] -> Calibration successful
INFO:    [01/08/2026 02:57:07] -> Initializing Pipeline...
INFO:    [01/08/2026 02:57:07] -> Preprocessing Run #1 of 6...
INFO:    [01/08/2026 02:57:07] -> Initialize Scoring...
INFO:    [01/08/2026 02:57:07] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:57:27] -> Machine Learning...
INFO:    [01/08/2026 02:57:34] -> Pipeline executed in 26.5s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:57:39] -> Calibration successful
INFO:    [01/08/2026 02:57:39] -> Initialize Scoring...
INFO:    [01/08/2026 02:57:39] -> Preprocessing Run #2 of 6...
INFO:    [01/08/2026 02:57:39] -> Searching DIA with Pulsar...
INFO:    [01/08/2026 02:57:39] -> Initializing Experiment...
INFO:    [01/08/2026 02:57:39] -> Loading Spectral Libraries...
INFO:    [01/08/2026 02:57:39] -> Initialize Scoring...
INFO:    [01/08/2026 02:57:39] -> Generating Scan Map...
INFO:    [01/08/2026 02:57:39] -> Initializing Workpackages...
INFO:    [01/08/2026 02:57:39] -> Performing Basic Calibration...
INFO:    [01/08/2026 02:57:39] -> Calibration successful
INFO:    [01/08/2026 02:57:39] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 02:57:39] -> Calibration successful
INFO:    [01/08/2026 02:57:39] -> Correcting Gradient Fine Structure...
INFO:    [01/08/2026 02:57:44] -> Initializing Pipeline...
INFO:    [01/08/2026 02:57:44] -> Preprocessing Run #2 of 6...
INFO:    [01/08/2026 02:57:44] -> Initialize Scoring...
INFO:    [01/08/2026 02:57:44] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:57:51] -> Machine Learning...
INFO:    [01/08/2026 02:57:52] -> Pipeline executed in 8.2s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:57:53] -> Calibration successful
INFO:    [01/08/2026 02:57:57] -> Initializing Pipeline...
INFO:    [01/08/2026 02:57:57] -> Preprocessing Run #2 of 6...
INFO:    [01/08/2026 02:57:57] -> Initialize Scoring...
INFO:    [01/08/2026 02:57:57] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:58:17] -> Machine Learning...
INFO:    [01/08/2026 02:58:23] -> Pipeline executed in 26.25s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:58:28] -> Calibration successful
INFO:    [01/08/2026 02:58:28] -> Initialize Scoring...
INFO:    [01/08/2026 02:58:28] -> Preprocessing Run #3 of 6...
INFO:    [01/08/2026 02:58:28] -> Searching DIA with Pulsar...
INFO:    [01/08/2026 02:58:28] -> Initializing Experiment...
INFO:    [01/08/2026 02:58:28] -> Loading Spectral Libraries...
INFO:    [01/08/2026 02:58:28] -> Initialize Scoring...
INFO:    [01/08/2026 02:58:28] -> Generating Scan Map...
INFO:    [01/08/2026 02:58:28] -> Initializing Workpackages...
INFO:    [01/08/2026 02:58:28] -> Performing Basic Calibration...
INFO:    [01/08/2026 02:58:29] -> Calibration successful
INFO:    [01/08/2026 02:58:29] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 02:58:29] -> Calibration successful
INFO:    [01/08/2026 02:58:29] -> Correcting Gradient Fine Structure...
INFO:    [01/08/2026 02:58:33] -> Initializing Pipeline...
INFO:    [01/08/2026 02:58:33] -> Preprocessing Run #3 of 6...
INFO:    [01/08/2026 02:58:33] -> Initialize Scoring...
INFO:    [01/08/2026 02:58:33] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:58:40] -> Machine Learning...
INFO:    [01/08/2026 02:58:41] -> Pipeline executed in 8.53s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:58:42] -> Calibration successful
INFO:    [01/08/2026 02:58:46] -> Initializing Pipeline...
INFO:    [01/08/2026 02:58:46] -> Preprocessing Run #3 of 6...
INFO:    [01/08/2026 02:58:46] -> Initialize Scoring...
INFO:    [01/08/2026 02:58:46] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:59:06] -> Machine Learning...
INFO:    [01/08/2026 02:59:13] -> Pipeline executed in 26.15s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:59:17] -> Calibration successful
INFO:    [01/08/2026 02:59:17] -> Initialize Scoring...
INFO:    [01/08/2026 02:59:17] -> Preprocessing Run #4 of 6...
INFO:    [01/08/2026 02:59:17] -> Searching DIA with Pulsar...
INFO:    [01/08/2026 02:59:17] -> Initializing Experiment...
INFO:    [01/08/2026 02:59:17] -> Loading Spectral Libraries...
INFO:    [01/08/2026 02:59:17] -> Initialize Scoring...
INFO:    [01/08/2026 02:59:17] -> Generating Scan Map...
INFO:    [01/08/2026 02:59:17] -> Initializing Workpackages...
INFO:    [01/08/2026 02:59:17] -> Performing Basic Calibration...
INFO:    [01/08/2026 02:59:18] -> Calibration successful
INFO:    [01/08/2026 02:59:18] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 02:59:18] -> Calibration successful
INFO:    [01/08/2026 02:59:18] -> Correcting Gradient Fine Structure...
INFO:    [01/08/2026 02:59:22] -> Initializing Pipeline...
INFO:    [01/08/2026 02:59:22] -> Preprocessing Run #4 of 6...
INFO:    [01/08/2026 02:59:22] -> Initialize Scoring...
INFO:    [01/08/2026 02:59:22] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:59:30] -> Machine Learning...
INFO:    [01/08/2026 02:59:31] -> Pipeline executed in 8.81s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 02:59:32] -> Calibration successful
INFO:    [01/08/2026 02:59:36] -> Initializing Pipeline...
INFO:    [01/08/2026 02:59:36] -> Preprocessing Run #4 of 6...
INFO:    [01/08/2026 02:59:36] -> Initialize Scoring...
INFO:    [01/08/2026 02:59:36] -> Extracting Ion Currents...
INFO:    [01/08/2026 02:59:56] -> Machine Learning...
INFO:    [01/08/2026 03:00:03] -> Pipeline executed in 26.57s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 03:00:07] -> Calibration successful
INFO:    [01/08/2026 03:00:07] -> Initialize Scoring...
INFO:    [01/08/2026 03:00:07] -> Preprocessing Run #5 of 6...
INFO:    [01/08/2026 03:00:07] -> Searching DIA with Pulsar...
INFO:    [01/08/2026 03:00:07] -> Initializing Experiment...
INFO:    [01/08/2026 03:00:07] -> Loading Spectral Libraries...
INFO:    [01/08/2026 03:00:07] -> Initialize Scoring...
INFO:    [01/08/2026 03:00:07] -> Generating Scan Map...
INFO:    [01/08/2026 03:00:07] -> Initializing Workpackages...
INFO:    [01/08/2026 03:00:07] -> Performing Basic Calibration...
INFO:    [01/08/2026 03:00:08] -> Calibration successful
INFO:    [01/08/2026 03:00:08] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 03:00:08] -> Calibration successful
INFO:    [01/08/2026 03:00:08] -> Correcting Gradient Fine Structure...
INFO:    [01/08/2026 03:00:12] -> Initializing Pipeline...
INFO:    [01/08/2026 03:00:12] -> Preprocessing Run #5 of 6...
INFO:    [01/08/2026 03:00:12] -> Initialize Scoring...
INFO:    [01/08/2026 03:00:12] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:00:19] -> Machine Learning...
INFO:    [01/08/2026 03:00:21] -> Pipeline executed in 8.66s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 03:00:21] -> Calibration successful
INFO:    [01/08/2026 03:00:26] -> Initializing Pipeline...
INFO:    [01/08/2026 03:00:26] -> Preprocessing Run #5 of 6...
INFO:    [01/08/2026 03:00:26] -> Initialize Scoring...
INFO:    [01/08/2026 03:00:26] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:00:45] -> Machine Learning...
INFO:    [01/08/2026 03:00:55] -> Pipeline executed in 29.67s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 03:01:00] -> Calibration successful
INFO:    [01/08/2026 03:01:00] -> Initialize Scoring...
INFO:    [01/08/2026 03:01:00] -> Preprocessing Run #6 of 6...
INFO:    [01/08/2026 03:01:00] -> Searching DIA with Pulsar...
INFO:    [01/08/2026 03:01:00] -> Initializing Experiment...
INFO:    [01/08/2026 03:01:00] -> Loading Spectral Libraries...
INFO:    [01/08/2026 03:01:00] -> Initialize Scoring...
INFO:    [01/08/2026 03:01:00] -> Generating Scan Map...
INFO:    [01/08/2026 03:01:00] -> Initializing Workpackages...
INFO:    [01/08/2026 03:01:00] -> Performing Basic Calibration...
INFO:    [01/08/2026 03:01:01] -> Calibration successful
INFO:    [01/08/2026 03:01:01] -> Identifying Calibration Peptides...
INFO:    [01/08/2026 03:01:01] -> Calibration successful
INFO:    [01/08/2026 03:01:01] -> Correcting Gradient Fine Structure...
INFO:    [01/08/2026 03:01:05] -> Initializing Pipeline...
INFO:    [01/08/2026 03:01:05] -> Preprocessing Run #6 of 6...
INFO:    [01/08/2026 03:01:05] -> Initialize Scoring...
INFO:    [01/08/2026 03:01:05] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:01:13] -> Machine Learning...
INFO:    [01/08/2026 03:01:14] -> Pipeline executed in 8.88s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 03:01:15] -> Calibration successful
INFO:    [01/08/2026 03:01:19] -> Initializing Pipeline...
INFO:    [01/08/2026 03:01:19] -> Preprocessing Run #6 of 6...
INFO:    [01/08/2026 03:01:19] -> Initialize Scoring...
INFO:    [01/08/2026 03:01:19] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:01:39] -> Machine Learning...
INFO:    [01/08/2026 03:01:45] -> Pipeline executed in 26.41s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [01/08/2026 03:01:51] -> Calibration successful
INFO:    [01/08/2026 03:01:51] -> Initialize Scoring...
INFO:    [01/08/2026 03:01:51] -> Initializing QC...
INFO:    [01/08/2026 03:01:51] -> Determining Calibration Parameter...
INFO:    [01/08/2026 03:01:51] -> Assigning ML Features...
INFO:    [01/08/2026 03:01:52] -> Generating Decoys...
INFO:    [01/08/2026 03:11:27] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:15:53] -> Releasing Raw Files...
INFO:    [01/08/2026 03:15:53] -> Machine Learning...
INFO:    [01/08/2026 03:18:56] -> Initializing HTRMS...
INFO:    [01/08/2026 03:18:56] -> Releasing Run Resources...
INFO:    [01/08/2026 03:18:57] -> Reducing Score Cache...
INFO:    [01/08/2026 03:19:04] -> Calculating Qvalues...
INFO:    [01/08/2026 03:19:07] -> Unique precursors: 132 628 of 143 509 | modified peptides: 119 111 of 127 289 | peptides: 117 120 of 125 207 |  protein groups: 11 319 (Qvalue <= 0.01) [LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw]
INFO:    [01/08/2026 03:19:07] -> Calibration successful
INFO:    [01/08/2026 03:19:07] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 03:19:08] -> Collapsing Search Tree...
INFO:    [01/08/2026 03:19:08] -> Processed in 17.29m
INFO:    [01/08/2026 03:19:08] -> Initializing QC...
INFO:    [01/08/2026 03:19:08] -> Determining Calibration Parameter...
INFO:    [01/08/2026 03:19:08] -> Assigning ML Features...
INFO:    [01/08/2026 03:19:09] -> Generating Decoys...
INFO:    [01/08/2026 03:19:09] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:23:10] -> Releasing Raw Files...
INFO:    [01/08/2026 03:23:11] -> Machine Learning...
INFO:    [01/08/2026 03:26:02] -> Initializing HTRMS...
INFO:    [01/08/2026 03:26:02] -> Releasing Run Resources...
INFO:    [01/08/2026 03:26:03] -> Reducing Score Cache...
INFO:    [01/08/2026 03:26:14] -> Calculating Qvalues...
INFO:    [01/08/2026 03:26:17] -> Unique precursors: 133 684 of 143 509 | modified peptides: 120 105 of 127 289 | peptides: 118 107 of 125 207 |  protein groups: 11 316 (Qvalue <= 0.01) [LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw]
INFO:    [01/08/2026 03:26:17] -> Calibration successful
INFO:    [01/08/2026 03:26:17] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 03:26:18] -> Collapsing Search Tree...
INFO:    [01/08/2026 03:26:18] -> Processed in 7.16m
INFO:    [01/08/2026 03:26:18] -> Initializing QC...
INFO:    [01/08/2026 03:26:18] -> Determining Calibration Parameter...
INFO:    [01/08/2026 03:26:18] -> Assigning ML Features...
INFO:    [01/08/2026 03:26:18] -> Generating Decoys...
INFO:    [01/08/2026 03:26:19] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:30:48] -> Releasing Raw Files...
INFO:    [01/08/2026 03:30:48] -> Machine Learning...
INFO:    [01/08/2026 03:33:43] -> Initializing HTRMS...
INFO:    [01/08/2026 03:33:43] -> Releasing Run Resources...
INFO:    [01/08/2026 03:33:44] -> Reducing Score Cache...
INFO:    [01/08/2026 03:33:54] -> Calculating Qvalues...
INFO:    [01/08/2026 03:33:56] -> Unique precursors: 133 783 of 143 509 | modified peptides: 120 151 of 127 289 | peptides: 118 143 of 125 207 |  protein groups: 11 307 (Qvalue <= 0.01) [LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw]
INFO:    [01/08/2026 03:33:56] -> Calibration successful
INFO:    [01/08/2026 03:33:57] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 03:33:57] -> Collapsing Search Tree...
INFO:    [01/08/2026 03:33:58] -> Processed in 7.66m
INFO:    [01/08/2026 03:33:58] -> Initializing QC...
INFO:    [01/08/2026 03:33:58] -> Determining Calibration Parameter...
INFO:    [01/08/2026 03:33:58] -> Assigning ML Features...
INFO:    [01/08/2026 03:33:58] -> Generating Decoys...
INFO:    [01/08/2026 03:33:59] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:37:59] -> Releasing Raw Files...
INFO:    [01/08/2026 03:38:00] -> Machine Learning...
INFO:    [01/08/2026 03:40:57] -> Initializing HTRMS...
INFO:    [01/08/2026 03:40:57] -> Releasing Run Resources...
INFO:    [01/08/2026 03:40:58] -> Reducing Score Cache...
INFO:    [01/08/2026 03:41:05] -> Calculating Qvalues...
INFO:    [01/08/2026 03:41:08] -> Unique precursors: 134 346 of 143 509 | modified peptides: 120 424 of 127 289 | peptides: 118 388 of 125 207 |  protein groups: 11 315 (Qvalue <= 0.01) [LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw]
INFO:    [01/08/2026 03:41:08] -> Calibration successful
INFO:    [01/08/2026 03:41:08] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 03:41:08] -> Collapsing Search Tree...
INFO:    [01/08/2026 03:41:09] -> Processed in 7.18m
INFO:    [01/08/2026 03:41:09] -> Initializing QC...
INFO:    [01/08/2026 03:41:09] -> Determining Calibration Parameter...
INFO:    [01/08/2026 03:41:09] -> Assigning ML Features...
INFO:    [01/08/2026 03:41:09] -> Generating Decoys...
INFO:    [01/08/2026 03:41:10] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:45:15] -> Releasing Raw Files...
INFO:    [01/08/2026 03:45:15] -> Machine Learning...
INFO:    [01/08/2026 03:48:44] -> Initializing HTRMS...
INFO:    [01/08/2026 03:48:44] -> Releasing Run Resources...
INFO:    [01/08/2026 03:48:45] -> Reducing Score Cache...
INFO:    [01/08/2026 03:48:53] -> Calculating Qvalues...
INFO:    [01/08/2026 03:48:56] -> Unique precursors: 134 649 of 143 509 | modified peptides: 120 754 of 127 289 | peptides: 118 716 of 125 207 |  protein groups: 11 370 (Qvalue <= 0.01) [LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw]
INFO:    [01/08/2026 03:48:56] -> Calibration successful
INFO:    [01/08/2026 03:48:56] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 03:48:57] -> Collapsing Search Tree...
INFO:    [01/08/2026 03:48:57] -> Processed in 7.81m
INFO:    [01/08/2026 03:48:57] -> Initializing QC...
INFO:    [01/08/2026 03:48:57] -> Determining Calibration Parameter...
INFO:    [01/08/2026 03:48:57] -> Assigning ML Features...
INFO:    [01/08/2026 03:48:58] -> Generating Decoys...
INFO:    [01/08/2026 03:48:58] -> Extracting Ion Currents...
INFO:    [01/08/2026 03:53:08] -> Releasing Raw Files...
INFO:    [01/08/2026 03:53:08] -> Machine Learning...
INFO:    [01/08/2026 03:56:01] -> Initializing HTRMS...
INFO:    [01/08/2026 03:56:01] -> Releasing Run Resources...
INFO:    [01/08/2026 03:56:02] -> Reducing Score Cache...
INFO:    [01/08/2026 03:56:09] -> Calculating Qvalues...
INFO:    [01/08/2026 03:56:11] -> Unique precursors: 134 629 of 143 509 | modified peptides: 120 813 of 127 289 | peptides: 118 767 of 125 207 |  protein groups: 11 354 (Qvalue <= 0.01) [LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw]
INFO:    [01/08/2026 03:56:11] -> Calibration successful
INFO:    [01/08/2026 03:56:12] -> Annotating In-Source Fragmentation...
INFO:    [01/08/2026 03:56:12] -> Collapsing Search Tree...
INFO:    [01/08/2026 03:56:13] -> Processed in 7.26m
INFO:    [01/08/2026 03:56:13] -> Normalizing Cscores...
INFO:    [01/08/2026 03:56:14] -> Calculating Global CVs
INFO:    [01/08/2026 03:56:16] -> Calculating Profile Qvalues...
INFO:    [01/08/2026 03:56:19] -> Initializing Protein Groups...
INFO:    [01/08/2026 03:56:53] -> Correcting Interferences...
INFO:    [01/08/2026 03:57:32] -> Calculating Global CVs
INFO:    [01/08/2026 03:57:34] -> Calculating Precursor Quantities...
INFO:    [01/08/2026 03:57:34] -> Normalizing Quantification...
INFO:    [01/08/2026 03:57:37] -> Performing Local Normalization...
INFO:    [01/08/2026 03:57:41] -> Calculating Global CVs
INFO:    [01/08/2026 03:57:43] -> Calculating Condition CVs
INFO:    [01/08/2026 03:57:48] -> Excluding Library Duplicates...
INFO:    [01/08/2026 03:57:49] -> Calculating Global CVs
INFO:    [01/08/2026 03:57:51] -> Building Protein Groups...
INFO:    [01/08/2026 03:58:22] -> Calculating Run-Wise Protein Group FDR...
INFO:    [01/08/2026 03:58:29] -> Annotating Protein Single Hits...
INFO:    [01/08/2026 03:58:32] -> Calculating Global CVs
INFO:    [01/08/2026 03:58:34] -> Updating Identification Counts...
INFO:    [01/08/2026 03:58:38] -> Subtracting background noise...
INFO:    [01/08/2026 03:58:38] -> Resetting existing imputation...
INFO:    [01/08/2026 03:58:38] -> Calculating Protein Quantities...
INFO:    [01/08/2026 03:58:40] -> Calculating Protein Quantities...
INFO:    [01/08/2026 03:58:40] -> Calculating MaxLFQ Protein Quantities...
INFO:    [01/08/2026 03:58:54] -> Collapsing PTM-Locations...
INFO:    [01/08/2026 03:58:54] -> PTM Stoichiometry calculation...
INFO:    [01/08/2026 03:58:54] -> Creating Protein Map...
INFO:    [01/08/2026 03:58:55] -> Compiling Run Summary Information...
INFO:    [01/08/2026 03:58:55] -> Running Post Analysis Processes...
INFO:    [01/08/2026 03:59:43] -> Saving Qc Data...
INFO:    [01/08/2026 03:59:51] -> Generating Output
INFO:    [01/08/2026 03:59:51] -> Generating Experiment Report
INFO:    [01/08/2026 04:01:32] -> 20260731_Quant_Astral_DIA_defaultParams_forRobbe_Report_BGS Factory Report (Normal).tsv
INFO:    [01/08/2026 04:01:32] -> Generating RT Recalibration Report
INFO:    [01/08/2026 04:01:33] -> LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw_1_iRTCalibration.tsv
INFO:    [01/08/2026 04:01:33] -> LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw_2_iRTCalibration.tsv
INFO:    [01/08/2026 04:01:33] -> LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw_3_iRTCalibration.tsv
INFO:    [01/08/2026 04:01:33] -> LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw_4_iRTCalibration.tsv
INFO:    [01/08/2026 04:01:33] -> LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw_5_iRTCalibration.tsv
INFO:    [01/08/2026 04:01:33] -> LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw_6_iRTCalibration.tsv
INFO:    [01/08/2026 04:01:33] -> Generating Run Meta Report
INFO:    [01/08/2026 04:01:34] -> LFQ_Astral_DIA_15min_50ng_Condition_A_REP1.raw_1_RunOverview.tsv
INFO:    [01/08/2026 04:01:34] -> LFQ_Astral_DIA_15min_50ng_Condition_A_REP2.raw_2_RunOverview.tsv
INFO:    [01/08/2026 04:01:34] -> LFQ_Astral_DIA_15min_50ng_Condition_A_REP3.raw_3_RunOverview.tsv
INFO:    [01/08/2026 04:01:34] -> LFQ_Astral_DIA_15min_50ng_Condition_B_REP1.raw_4_RunOverview.tsv
INFO:    [01/08/2026 04:01:34] -> LFQ_Astral_DIA_15min_50ng_Condition_B_REP2.raw_5_RunOverview.tsv
INFO:    [01/08/2026 04:01:34] -> LFQ_Astral_DIA_15min_50ng_Condition_B_REP3.raw_6_RunOverview.tsv
INFO:    [01/08/2026 04:01:34] -> Generating Post Analysis Reports
INFO:    [01/08/2026 04:01:35] -> 20260731_Quant_Astral_DIA_defaultParams_forRobbe_AnalyisOverview.txt
INFO:    [01/08/2026 04:01:35] -> ProteinFDR-Histogram.pdf
INFO:    [01/08/2026 04:01:35] -> Heatmap.png
INFO:    [01/08/2026 04:01:35] -> Generating Normalization Report
INFO:    [01/08/2026 04:01:39] -> 20260731_Quant_Astral_DIA_defaultParams_forRobbe_Normalization.pdf
INFO:    [01/08/2026 04:01:39] -> Generating Condition Setup Report
INFO:    [01/08/2026 04:01:39] -> 20260731_Quant_Astral_DIA_defaultParams_forRobbe_ConditionSetup.tsv
INFO:    [01/08/2026 04:01:39] -> Generating Memory Consumption Report
INFO:    [01/08/2026 04:01:39] -> 20260731_Quant_Astral_DIA_defaultParams_forRobbe_MemoryConsumption.tsv
INFO:    [01/08/2026 04:01:39] -> Generating Experiment Settings Report
[END-LOG]
